DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mrn and gft-2H4

DIOPT Version :9

Sequence 1:NP_648780.1 Gene:mrn / 39688 FlyBaseID:FBgn0261109 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_001263824.1 Gene:gft-2H4 / 178431 WormBaseID:WBGene00013529 Length:485 Species:Caenorhabditis elegans


Alignment Length:522 Identity:156/522 - (29%)
Similarity:255/522 - (48%) Gaps:73/522 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MADTKSGSGRHSAAGGSGNAVLSPLGQGPANLECKDFQEYLRTRQTPESLEKLYNYPPICLAVFR 65
            |:..:..:..|.....|.|:.|              |.::|.| ..|::.::|...|.....::|
 Worm     1 MSSDQPAAAPHLTGTSSKNSCL--------------FLDFLIT-IPPKTRQRLLQKPSCAFFIYR 50

  Fly    66 ELPEIARQFIIRILFVDQ-PVPQAVVTSWGAQRCAKEQAEATSCLTALNVWRVTAIPGGLSAWEL 129
            .||.||:|..|::::... |....|..:       ||..:....|..|.:.......|.|:   :
 Worm    51 MLPPIAQQTTIQLIWKGSFPTASDVEET-------KEIEDQVKLLKDLGLVHRQTTDGKLN---I 105

  Fly   130 SPTFKKS-VRQVLLGGGKPWPMT------NTLDKDSKPRDIAFLDTYAMSRWRCVLHYMVGTGNR 187
            ...:|:| :...:||..:...:.      |...||        ::..|:.||.|:|.|:......
 Worm   106 DTDYKRSYMYAAMLGAAQISSLVLEPNEGNRRGKD--------VEKKAVERWDCILRYLALPSEE 162

  Fly   188 NGTDAEAISPDAVRILLHANLMKRDERDGITITRQGFQFLLLDTRAQVWHFMLQYLDTCEERGIS 252
            |   .:|:|.....:...||.....:.. |.||..|||||||....|:|.::::||.....:|..
 Worm   163 N---TQAVSETTRNLFKKANFTSGGDTQ-IEITTFGFQFLLLSPVKQMWTYVIEYLKLEMSQGQD 223

  Fly   253 LPECLSMLFQL----------SFSTLGRDYS-----SEGMNSQMLTFLQHLREFGLVFQRKRKEG 302
            :.|.:..|.|:          .|......|.     :|..|.    .|.||||.|::|.||||:|
 Worm   224 IVEVIEPLIQIVLLANRVQVAGFKAERECYQIDANWTEPQNE----LLNHLRELGVIFIRKRKDG 284

  Fly   303 RFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVVETNYRVYAYTDSPLQVAVLGLFTELLYR 367
            .|:.|:|..::.:.|.....|.   |:.:.  |.::||||:||||||.|.||:|::.||||:.||
 Worm   285 VFFLTQLLTHLATNETIDDVSA---EKVSN--GKVIVETNFRVYAYTSSLLQLAIIALFTEMTYR 344

  Fly   368 FPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQYAHPNMRMVESAIHSKSCLPPTVVDQIKLWEL 432
            |.::.||::||:|||.||:.||||.||:|:|...|||........:   :|||.||.|||:|||.
 Worm   345 FQDMSVGMITRESVRGALQHGITAAQIISFLRANAHPQCIATSGPV---NCLPITVADQIRLWED 406

  Fly   433 ERNRFTYTEGVLYNQFLSHTDFVTLRDYAQSIHMLVWQNERTRTMVVQKNGHDDVKRYWKK-YSK 496
            ||.|....:..:|:.|.|..:|..:.:||:..::|:|.:.:.:.::|.::||:.|::::|: .||
 Worm   407 ERRRMNLKDAYIYSHFESEDEFHGVCEYARQQNILLWSDNQQKLVIVNEDGHELVRQWYKREKSK 471

  Fly   497 SG 498
            :|
 Worm   472 TG 473

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mrnNP_648780.1 Tfb2 39..403 CDD:281797 117/386 (30%)
gft-2H4NP_001263824.1 Tfb2 25..380 CDD:281797 117/386 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160162172
Domainoid 1 1.000 155 1.000 Domainoid score I2598
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 212 1.000 Inparanoid score I2363
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54356
OrthoDB 1 1.010 - - D433426at33208
OrthoFinder 1 1.000 - - FOG0004312
OrthoInspector 1 1.000 - - oto20132
orthoMCL 1 0.900 - - OOG6_101881
Panther 1 1.100 - - LDO PTHR13152
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1501
SonicParanoid 1 1.000 - - X3583
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.940

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