DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SCCRO and Dcun1d1

DIOPT Version :9

Sequence 1:NP_001246770.1 Gene:SCCRO / 39685 FlyBaseID:FBgn0036510 Length:297 Species:Drosophila melanogaster
Sequence 2:XP_006232323.1 Gene:Dcun1d1 / 310324 RGDID:1309668 Length:273 Species:Rattus norvegicus


Alignment Length:250 Identity:157/250 - (62%)
Similarity:199/250 - (79%) Gaps:6/250 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 SINKLKSSTHRDKVKKFISLTHTGEQTAIFCLQQNDWKFELASDNYFQNPEYYYRE-----LDRK 68
            |:|||||| .:|||::|:..|.:.|:||:.||.|||||.::|:||:|||||.|.||     ||||
  Rat    14 SLNKLKSS-QKDKVRQFMIFTQSSEKTAVSCLSQNDWKLDVATDNFFQNPELYIRESVKGSLDRK 77

  Fly    69 RIEQLFMRYRDPSDPLKIGSQGVIHFLEDLDLKPDSKLVLIIAWKFHAEVQCEFSRDEFINGMCD 133
            ::|||:.||:||.|..|||..|:..|.:||.|.|.|..||||||||.|..|||||:.||::||.:
  Rat    78 KLEQLYNRYKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFSKQEFMDGMTE 142

  Fly   134 LGIDSIDKLKTKLPILEQELNDAGKFKDFYHFTFNYAKDPGQKGIDLEMAIAYWCIVLSGRFKFL 198
            ||.||::|||.::|.:||||.:.|:|||||.||||:||:|||||:|||||||||.:||:||||||
  Rat   143 LGCDSVEKLKAQIPKMEQELKEPGRFKDFYQFTFNFAKNPGQKGLDLEMAIAYWNLVLNGRFKFL 207

  Fly   199 DIWCQFLEEKHKRAISRDTWNLLLDFATNIDDRMSNYDSEGAWPVLIDDFVEWCQ 253
            |:|.:||.|.|||:|.:|||||||||::.|.|.|||||.|||||||||||||:.:
  Rat   208 DLWNKFLLEHHKRSIPKDTWNLLLDFSSMIADDMSNYDEEGAWPVLIDDFVEFAR 262

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SCCRONP_001246770.1 UBA_like_SF 11..58 CDD:304366 26/46 (57%)
Cullin_binding 141..252 CDD:281545 80/110 (73%)
Dcun1d1XP_006232323.1 UBA_like_SF 15..65 CDD:304366 29/50 (58%)
Cullin_binding 150..261 CDD:281545 80/110 (73%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166336817
Domainoid 1 1.000 178 1.000 Domainoid score I3464
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 331 1.000 Inparanoid score I2355
OMA 1 1.010 - - QHG53724
OrthoDB 1 1.010 - - D1418097at2759
OrthoFinder 1 1.000 - - FOG0000501
OrthoInspector 1 1.000 - - otm45990
orthoMCL 1 0.900 - - OOG6_102228
Panther 1 1.100 - - O PTHR12281
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1511
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.910

Return to query results.
Submit another query.