DRSC/TRiP Functional Genomics Resources

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Protein Alignment AGO2 and ago3b

DIOPT Version :9

Sequence 1:NP_730054.1 Gene:AGO2 / 39683 FlyBaseID:FBgn0087035 Length:1217 Species:Drosophila melanogaster
Sequence 2:XP_005159513.1 Gene:ago3b / 568159 ZFINID:ZDB-GENE-060503-452 Length:867 Species:Danio rerio


Alignment Length:855 Identity:278/855 - (32%)
Similarity:415/855 - (48%) Gaps:103/855 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   395 AAP-LPLPPQPAGSIKRGTIGKPGQVGINYLDLDLSKMPSVAYHYDVKIMPER-PKKFYRQA--- 454
            ||| ..:|.:|.    .||:|||.::..|...:|:.||.  .|.|||.|.||: |::..|:.   
Zfish    11 AAPQFSVPRRPG----YGTMGKPIKLLANCFQVDIPKMD--VYLYDVDIKPEKCPRRVNREVVDS 69

  Fly   455 -FEQFRVDQLGGAVLAYDGKASCYSVDKLPLNSQ--NPEVTVTDRNGRTLRYTIEIK-------- 508
             .:.|:|...|.....||||.|.|:...||:.|.  :.:||:....|:...:.:.||        
Zfish    70 MVQHFKVTIFGDRRPVYDGKKSLYTAQPLPVASAGVDLDVTLPGEGGKDRIFKVTIKFVSLVSWH 134

  Fly   509 -----ETGDSTIDLKSLTTYMNDRIFDKPM--RAMQCVEVVLASPCHNKAIR---VGRSFFKMSD 563
                 .||.||.|...|         |||:  ..:..|:|||.   |..::|   ||||||  |.
Zfish   135 MLHEVLTGRSTPDPLEL---------DKPISTNPVHAVDVVLR---HLPSMRYTPVGRSFF--SS 185

  Fly   564 PNN-RHELDDGYEALVGLYQAFMLGDRP-----FLNVDISHKSFPISMPMIEYLERFSLKAKINN 622
            |.. .|.|..|.|...|.:|:.    ||     .||:|:|..:|..:.|:|:::      .::.:
Zfish   186 PEGYDHPLGGGREVWFGFHQSV----RPAMWKMMLNIDVSATAFYKAQPVIQFM------CEVLD 240

  Fly   623 TTNLDYSRRFLEPF--------LRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFE---HDG 676
            ..|:|...|.|...        ::|:.|..|...:.:   |.|||..::|.|||.:||.   .:|
Zfish   241 IHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMR---RKYRVCNVTRRPASHQTFPLQLENG 302

  Fly   677 KKV--TIASYFHSR-NYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIK 738
            :.|  |:|.||..: |..||:|.|.||.||...|...||:|:|:|..||...:|....|.:.|||
Zfish   303 QTVERTVAQYFREKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIK 367

  Fly   739 YAATSTNVRKRKIMNLLQYFQHNLDPTISRFGIRIANDFIVVSTRVLSPPQVEY-------HSKR 796
            ..|.|...|:.:|..|::...:|.||.:..|..|:.::...|:.|||..|.::|       |...
Zfish   368 ATARSAPDRQEEISRLVRSANYNSDPFVQEFQFRVRDEMAEVTGRVLPAPMLQYGGRVSSEHFMN 432

  Fly   797 FTMV--KNGSWRMDGMKF---LEPKPKAHKCAVLYCDPRSGRKMNYTQLNDFGNLIISQGKAVNI 856
            .|:.  .:|.|.|.|.:|   :|.|..|..|..      :.|:.....|..|.:.:....|...:
Zfish   433 RTVATPSHGVWDMRGKQFHTGVEIKMWAIACFA------TQRQCREEVLKGFTDQLRKISKDAGM 491

  Fly   857 SLDSDVTYRPFTDDERSLDTIFADLKRSQH--DLAIVIIPQFRISYDTIKQKAELQHGILTQCIK 919
            .:.....:..:.....:::.:|..||.:..  .|.|||:|.....|..:|:..:...|:.|||::
Zfish   492 PIQGQPCFCKYAQGADNVEPMFRHLKNTYAGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQ 556

  Fly   920 QFTVERKCNNQTIGNILLKINSKLNGINHKIKDDPRLPMMKN-TMYIGADVTHPSPDQREIPSVV 983
            ...|. |.:.||:.|:.||||.||.|||:.:....|..:.:. .:::|||||||.....:.||:.
Zfish   557 VKNVV-KTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIA 620

  Fly   984 GVAASHDPYGASYNMQYRLQRGALEEIEDMFSITLEHLRVYKEYRNAYPDHIIYYRDGVSDGQFP 1048
            .|..|.|.:.:.|....|:||...|.|:|:.|:..|.|..:.:..:..|..||:||||||:|||.
Zfish   621 AVVGSMDAHPSRYCATVRVQRPRQEVIQDLASMVRELLIQFYKSTHYKPTRIIFYRDGVSEGQFR 685

  Fly  1049 KIKNEELRCIKQACDKV--GCKPKICCVIVVKRHHTRFFPSGDVTTSNKFNNVDPGTVVDRTIVH 1111
            ::...||..|::||..:  ..:|.|..::|.||||||.|.:.......:..|:..||.||..|.|
Zfish   686 QVLYYELLAIREACISLEKEYQPGITYIVVQKRHHTRLFCADRAERVGRSGNIPAGTTVDTDITH 750

  Fly  1112 PNEMQFFMVSHQAIQGTAKPTRYNVIENTGNLDIDLLQQLTYNLCHMFPRCNRSVSYPAPAYLAH 1176
            |.|..|::.||..||||::|:.|.|:.:......|..|.|||.|||.:.||.||||.|||||.||
Zfish   751 PYEFDFYLCSHAGIQGTSRPSHYYVLWDDNCFTADEFQLLTYQLCHTYVRCTRSVSIPAPAYYAH 815

  Fly  1177 LVAARGRVYL 1186
            |||.|.|.:|
Zfish   816 LVAFRARYHL 825

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AGO2NP_730054.1 PLN03202 411..1180 CDD:215631 269/830 (32%)
ArgoN 411..543 CDD:293095 46/153 (30%)
ArgoL1 554..601 CDD:285861 20/52 (38%)
PAZ 605..719 CDD:239207 39/127 (31%)
Piwi_ago-like 764..1186 CDD:240015 147/438 (34%)
ago3bXP_005159513.1 PLN03202 11..866 CDD:215631 278/855 (33%)
ArgoN 20..167 CDD:293095 47/161 (29%)
ArgoL1 178..227 CDD:285861 21/54 (39%)
PAZ_argonaute_like 228..348 CDD:239212 39/128 (30%)
Piwi_ago-like 393..825 CDD:240015 147/438 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1041
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG58336
OrthoDB 1 1.010 - - D159407at2759
OrthoFinder 1 1.000 - - FOG0000468
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22891
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.930

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