DRSC/TRiP Functional Genomics Resources

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Protein Alignment AGO2 and ago4

DIOPT Version :9

Sequence 1:NP_730054.1 Gene:AGO2 / 39683 FlyBaseID:FBgn0087035 Length:1217 Species:Drosophila melanogaster
Sequence 2:XP_004911629.1 Gene:ago4 / 100495218 XenbaseID:XB-GENE-1006882 Length:890 Species:Xenopus tropicalis


Alignment Length:846 Identity:272/846 - (32%)
Similarity:413/846 - (48%) Gaps:85/846 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   398 LPLPP-----QPAGSIKRGTIGKPGQVGINYLDLDLSKMPSVAYHYDVKIMPE-RPKKFYRQAFE 456
            ||.||     ||......||:|||.::..|:..:.:.|:.  .|||||.|.|| ||::..|:..:
 Frog    31 LPGPPPTNLFQPPRRPGLGTLGKPIRLLANHFQVQIPKID--VYHYDVDIKPEKRPRRVNREVVD 93

  Fly   457 ----QFRVDQLGGAVLAYDGKASCYSVDKLPLNSQNPEVTVT---DRNGRTLRYTIEIKETGDST 514
                .|::...|.....||||.:.|:...||:.....::.||   :...:|.:.||:    ..|.
 Frog    94 TMVRHFKMPIFGDRQPGYDGKRNMYTAHPLPIGRDRVDLEVTLPGEGKDQTFKVTIQ----WVSV 154

  Fly   515 IDLKSLTTYMNDRIFDKPMRAMQCVEVVLASPCHNKAIR---VGRSFFKMSDPNN-RHELDDGYE 575
            :.|:.|...:...:.:.|..::|.::|:..   |..::|   ||||||  |.|.. .|.|..|.|
 Frog   155 VSLQLLLEALAGHLSEVPDDSVQALDVITR---HLPSMRYTPVGRSFF--SPPEGYYHPLGGGRE 214

  Fly   576 ALVGLYQAFMLGDRP-----FLNVDISHKSFPISMPMIEYLERFSLKAKINNTTN--LDYSRRFL 633
            ...|.:|:.    ||     .||:|:|..:|..:.|:||::........||..|.  .|..|...
 Frog   215 VWFGFHQSV----RPAMWNMMLNIDVSATAFYRAQPVIEFMCEVLDVQNINEQTKPLTDSQRVKF 275

  Fly   634 EPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFE---HDGK--KVTIASYFHSR-NYPL 692
            ...:||:.|..|.....:   |.|||..::|.|||.:||.   .:|:  :.|:|.||..: :..|
 Frog   276 TKEIRGLKVEVTHCGQMK---RKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQL 337

  Fly   693 KFPQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIKYAATSTNVRKRKIMNLLQY 757
            |:|.|.||.||...|...||:|:|:|..||...:|....|.:.|||..|.|...|:.:|..|:: 
 Frog   338 KYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVK- 401

  Fly   758 FQHNL----DPTISRFGIRIANDFIVVSTRVLSPPQVEY----HSKRFTMVKNGSWRMDGMKF-- 812
             .:::    ||.:..|||.:.|:...::.|||..|.::|    .:|.......|.|.|.|.:|  
 Frog   402 -SNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRVSNKTVATPNQGVWDMRGKQFYA 465

  Fly   813 -LEPKPKAHKCAVLYCDPRSGRKMNYTQLNDFGNLIISQGKAVNISLDSDVTYRPFTDDERSLDT 876
             :|.|..|..|..    |:  ::.....|..|.:.:....|...:.:.....:..:.....|::.
 Frog   466 GIEIKVWAVACFA----PQ--KQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEP 524

  Fly   877 IFADLKRSQ--HDLAIVIIPQFRISYDTIKQKAELQHGILTQCIKQFTVERKCNNQTIGNILLKI 939
            :|..||.:.  ..|.:||:|.....|..:|:..:...|:.|||::...|. |.:.||:.|:.|||
 Frog   525 MFKHLKLTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVV-KTSPQTLSNLCLKI 588

  Fly   940 NSKLNGINHKIKDDPRLPMMKN-TMYIGADVTHPSPDQREIPSVVGVAASHDPYGASYNMQYRLQ 1003
            |:||.|||:.:....|..:.:. .:::|||||||.....:.||:..|..|.|.:.:.|....|:|
 Frog   589 NAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQ 653

  Fly  1004 RG----------ALEEIEDMFSITLEHL-RVYKEYRNAYPDHIIYYRDGVSDGQFPKIKNEELRC 1057
            ..          :.|.|:|:.::..|.| :.||..| ..|..|||||.|||:||..::...||..
 Frog   654 TSRQETTQELLYSQEVIQDLSNMVRELLIQFYKSTR-FKPTRIIYYRGGVSEGQMKQVAWPELMA 717

  Fly  1058 IKQACDKV--GCKPKICCVIVVKRHHTRFFPSGDVTTSNKFNNVDPGTVVDRTIVHPNEMQFFMV 1120
            |::||..:  ..:|.|..::|.||||||.|.:.......|..||..||.||.||.||:|..|::.
 Frog   718 IRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLC 782

  Fly  1121 SHQAIQGTAKPTRYNVIENTGNLDIDLLQQLTYNLCHMFPRCNRSVSYPAPAYLAHLVAARGRVY 1185
            ||..||||::|:.|.|:.:......|.||.|||.|||.:.||.||||.|||||.|.|||.|.|.:
 Frog   783 SHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYH 847

  Fly  1186 L 1186
            |
 Frog   848 L 848

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AGO2NP_730054.1 PLN03202 411..1180 CDD:215631 262/820 (32%)
ArgoN 411..543 CDD:293095 38/139 (27%)
ArgoL1 554..601 CDD:285861 20/52 (38%)
PAZ 605..719 CDD:239207 40/121 (33%)
Piwi_ago-like 764..1186 CDD:240015 150/444 (34%)
ago4XP_004911629.1 PLN03202 42..889 CDD:215631 267/835 (32%)
ArgoN 45..182 CDD:293095 37/142 (26%)
ArgoL1 194..243 CDD:285861 21/54 (39%)
PAZ_argonaute_like 244..364 CDD:239212 40/122 (33%)
Piwi_ago-like 411..848 CDD:240015 150/444 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG58336
OrthoDB 1 1.010 - - D159407at2759
OrthoFinder 1 1.000 - - FOG0000468
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22891
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.030

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