DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment obst-H and R02F2.4

DIOPT Version :9

Sequence 1:NP_001034020.1 Gene:obst-H / 39681 FlyBaseID:FBgn0053983 Length:269 Species:Drosophila melanogaster
Sequence 2:NP_498171.1 Gene:R02F2.4 / 175755 WormBaseID:WBGene00019833 Length:431 Species:Caenorhabditis elegans


Alignment Length:324 Identity:65/324 - (20%)
Similarity:101/324 - (31%) Gaps:100/324 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 CL--VLLWSSRINADHFDECDGMDDGAFVQSWESCQ-SYVYCEGEESLKGDCEDGEYFDSEAGTC 70
            ||  :||..|.:|:....:|..:.||.:...  :|: .::.|...|:...||.:...:......|
 Worm     6 CLTTLLLTISTVNSKFVTDCTNVGDGMYPLG--ACEPRFLACVSGEARYMDCPEDLVYHKNLEFC 68

  Fly    71 DIAANVSCFLDEVDE--------------------PSDPEPETDEEEEEI--------------- 100
            |...||....:|.:|                    .|..|...||..|.:               
 Worm    69 DWRHNVFECGEEGEENEFSGDGSGESSGDEEITFGDSSGESSGDELLENVCESLKDGVYSSGTCS 133

  Fly   101 -------PATPR--PTEPPIVETPTEVD------IINIAPVVRPNCPISDDPGQVIFMASNNSCT 150
                   ..:||  ....|::..||...      |...:.|....|   :..|.:    |.:.|:
 Worm   134 SSYIICNSGSPRFLSCSTPLIYDPTNKKCSWKGMIDECSQVSGEYC---ESDGNI----SKSECS 191

  Fly   151 N-YYLCYHGHAMEMHCDNELYFNSLTGQCDYPDKVQCAFEDPRSHKCLPHMTEFFPHPDNC---- 210
            | ::.|..|.|...:|...|.||.....||:|..|....|  :|.|           |.||    
 Worm   192 NVFFSCSEGIAHRRNCPANLVFNPAISSCDWPKNVMDCSE--KSEK-----------PQNCGEVD 243

  Fly   211 NYFYY---------CIKGFLTLQQCP-----------FYYGWDIERRSCVQIGVAKCYGNSRRI 254
            .||.:         |..|...:..||           ..|.|:::.......|..:.|..|..:
 Worm   244 GYFSFGRCSSSFSACTNGIPIVMFCPDGLMFSEKNQMCDYEWNVDECDLESSGFMENYKASEAL 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
obst-HNP_001034020.1 CBM_14 26..77 CDD:279884 11/51 (22%)
CBM_14 142..184 CDD:279884 13/42 (31%)
ChtBD2 203..240 CDD:214696 11/60 (18%)
R02F2.4NP_498171.1 CBM_14 25..74 CDD:279884 10/50 (20%)
ChtBD2 117..165 CDD:214696 5/47 (11%)
CBM_14 185..229 CDD:279884 14/47 (30%)
ChtBD2 240..283 CDD:214696 6/42 (14%)
CBM_14 310..361 CDD:279884
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D487374at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23301
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.020

Return to query results.
Submit another query.