DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment MsrA and Msrb1

DIOPT Version :9

Sequence 1:NP_001261879.1 Gene:MsrA / 39675 FlyBaseID:FBgn0000565 Length:261 Species:Drosophila melanogaster
Sequence 2:NP_001037750.2 Gene:Msrb1 / 685059 RGDID:1583243 Length:116 Species:Rattus norvegicus


Alignment Length:33 Identity:9/33 - (27%)
Similarity:18/33 - (54%) Gaps:1/33 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 EVLEIDYDPTV-ISFKELLDLFWNNHEYGLTTP 118
            ||.:..::|.| :..|...:||.:..:|..::|
  Rat    10 EVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSP 42

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsrANP_001261879.1 PMSR 42..174 CDD:279899 9/33 (27%)
Msrb1NP_001037750.2 SelR <7..109 CDD:301730 9/33 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166352445
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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