DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment MsrA and msra.2

DIOPT Version :10

Sequence 1:NP_001261879.1 Gene:MsrA / 39675 FlyBaseID:FBgn0000565 Length:261 Species:Drosophila melanogaster
Sequence 2:XP_012811860.1 Gene:msra.2 / 100135729 XenbaseID:XB-GENE-921356 Length:217 Species:Xenopus tropicalis


Alignment Length:135 Identity:53/135 - (39%)
Similarity:72/135 - (53%) Gaps:21/135 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 LNISPVHDVNVTKA---------TATFGMGCFWGAESLYGATRGVLRTTVGYAGGSSDLPTYRK- 81
            |.::..|.||....         .|.||||||||||.|:....||..|.||:|||.:..|||:: 
 Frog    21 LQVADKHMVNGNSTLEPFPDGLEIAVFGMGCFWGAERLFWKQEGVYSTQVGFAGGHTPNPTYKEV 85

  Fly    82 ---MGDHTEVLEIDYDPTVISFKELLDLFWNNHEYGLTTPIKR------QYASLILYHDEEQKQV 137
               :..|.||:.:.:||.||::|.||.|||.||:  .|..:|:      ||.|:|..:.|.||..
 Frog    86 RTGLTAHAEVVRVVFDPKVITYKVLLKLFWENHD--PTEGMKQGEDVGTQYRSVIFTYGENQKDA 148

  Fly   138 AHASK 142
            |..|:
 Frog   149 ALLSR 153

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MsrANP_001261879.1 PMSR 41..174 CDD:460270 49/112 (44%)
msra.2XP_012811860.1 MsrA 39..>158 CDD:439995 49/117 (42%)

Return to query results.
Submit another query.