Protein Alignment cocoon and AT1G76460

DIOPT Version :10

• Sequence 1: NP_648764.1
• Gene: cocoon / 39665
• FlyBaseID: FBgn0036496
• Length: 318
• Species: Drosophila melanogaster
• Sequence 2: NP_565132.2
• Gene: AT1G76460 / 843979
• AraportID: AT1G76460
• Length: 285
• Species: Arabidopsis thaliana
• Alignment Length: 156
• Identity: 40/156 - (25%)
• Similarity: 60/156 - (38%)
• Gaps: 49/156 - (31%)

  Fly    61 YSPSEETGWGEYHYFCVFPKKNKRQSEDNLENS----TAKTKRTEAHLRCFDLIVLGLSYNTTEQ 121
            |.|...:|   :||.                ||    |..||          :.|.||::.|..:
plant     3 YQPVPGSG---FHYL----------------NSPFGDTTFTK----------VFVGGLAWETQSE 38

  Fly   122 DLREYFETYGDVVKAEIKKDTRSGHSKGFGFVRFGSYDVQMHVLS-KRHSIDGRWCEVKVPASRG 185
            .||::||.||::::|.:..|..:|.|||:|||.|...:......: ....||||.....: ||.|
plant    39 TLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNL-ASLG 102

  Fly   186 M--------------GNQEPGKVFVG 197
            .              |...|...::|
plant   103 RPRPPLPYAVIPNMPGRLRPASPYIG 128

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cocoon	NP_648764.1	TDP43_N	3..78	CDD:465833	5/16 (31%)
		RRM1_TDP43	108..181	CDD:409760	24/73 (33%)
		RRM2_TDP43	193..262	CDD:409761	1/5 (20%)
AT1G76460	NP_565132.2	RRM_RBM24_RBM38_like	24..99	CDD:409818	26/85 (31%)
		PABP-1234	<37..245	CDD:130689	26/93 (28%)