DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cocoon and RBP1

DIOPT Version :10

Sequence 1:NP_648764.1 Gene:cocoon / 39665 FlyBaseID:FBgn0036496 Length:318 Species:Drosophila melanogaster
Sequence 2:NP_176143.1 Gene:RBP1 / 842216 AraportID:AT1G58470 Length:360 Species:Arabidopsis thaliana


Alignment Length:256 Identity:66/256 - (25%)
Similarity:106/256 - (41%) Gaps:54/256 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 FDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFVRFGSYDVQMHVLSKRHSI 171
            :.|.|.|::..|:|:.|::||..||.|::|.:.|:..:|..:|||||||.:....:..|...|.|
plant     6 YKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDTHFI 70

  Fly   172 DGRWCEVKVPASRGMGNQEP-----------------------------GKVFVGRCTEDIEADD 207
            .|:..:|:....:....|:|                             .|:|||..:.:...::
plant    71 LGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEE 135

  Fly   208 LREYFSKFGEVIDVFI------PKPFRAFSFVTF-LDPYVPRVVCGEKHIIKGVSVHVSTA-DKK 264
            .:.||.:||...||.:      .:| |.|.|||: .:..|..|:....|.:....|.|..| .|:
plant   136 FKSYFERFGRTTDVVVMHDGVTNRP-RGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKE 199

  Fly   265 NVQNKN----------QLFQTNNYNNLDNNFKMQ---PANNFRMHPANNFSMHSFNPHGYQ 312
            .:|:.|          ..||...|....|.:.|.   |...|..|  :|.....: |:|||
plant   200 GIQSNNGNAVNIPPSYSSFQATPYVPEQNGYGMVLQFPPPVFGYH--HNVQAVQY-PYGYQ 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cocoonNP_648764.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 26/72 (36%)
RRM2_TDP43 193..262 CDD:409761 22/76 (29%)
RBP1NP_176143.1 PABP-1234 <8..>277 CDD:130689 66/254 (26%)
RRM2_Hrp1p 121..198 CDD:409767 22/77 (29%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.