DRSC/TRiP Functional Genomics Resources

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Protein Alignment cocoon and RBP45B

DIOPT Version :10

Sequence 1:NP_648764.1 Gene:cocoon / 39665 FlyBaseID:FBgn0036496 Length:318 Species:Drosophila melanogaster
Sequence 2:NP_172630.1 Gene:RBP45B / 837708 AraportID:AT1G11650 Length:405 Species:Arabidopsis thaliana


Alignment Length:392 Identity:71/392 - (18%)
Similarity:135/392 - (34%) Gaps:119/392 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   357 SEAESL--LKKMEEKGISPDTKTYNILLSLHADAGDIEAALEYYR----KIRKVGLFPDTVTHRA 415
            ||||.|  :.|.....:.|.:..::..:.:.|   .|||.:...|    |.|.:|:...:.|.:.
plant   155 SEAEMLENIAKDVSNKLFPPSNNFSDFVGIEA---HIEALISMLRFDSKKARMIGICGPSETGKT 216

  Fly   416 VLHILCQRKMVAEV--EAVIAEMDRNSIRIDEHSVPVIMQMYVNEGLVVQAKALFERFQLDCVLS 478
            .:......::.::.  .|.:|.  :..||.|........:.:::|.|..:...:.|...::..|.
plant   217 TIGRALYSRLKSDFHHRAFVAY--KRKIRSDYDQKLYWEEQFLSEILCQKDIKIEECGAVEQRLK 279

  Fly   479 STTLAAVIDVYAEKGLWVEAETVFYGKRNMSGQRNDVL---EYNVMIKAYGKAKLHEKALSLFKG 540
            .|.:..|:|...:    :|......|:....|..:.::   :...::||:..|.::|..      
plant   280 HTKVLIVLDDVDD----IELLKTLVGRIRWFGSESKIVVITQKRELLKAHNIAHVYEVG------ 334

  Fly   541 MKNQGTWPDECTYNSLFQMLA--------GV-DLVDEAQRILAEMLDSGCKPGCKTYAAMIASYV 596
                  :|.|...:.:|...|        |. :|.|||.:|      :|.:|....|..  :|:.
plant   335 ------FPSEELAHQMFCRYAFGKNSPPHGFNELADEAAKI------AGNRPKALKYVG--SSFR 385

  Fly   597 RLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMVEEAIQYFRMMEEHGVQSNHIVLTSL 661
            ||                                       :..|:.:|:.|.....|.:.::  
plant   386 RL---------------------------------------DKEQWVKMLSEFRSNGNKLKIS-- 409

  Fly   662 IKAYSKVGCLEEARRVYDKMKDSEGGPDVA----ASNSMLS---LCADLGIVSEAESIFNALREK 719
                            ||:: |.:|...||    .|||.:.   :...||:     ||...:|..
plant   410 ----------------YDEL-DGKGQDYVACLTNGSNSQVKAEWIHLALGV-----SILLNIRSD 452

  Fly   720 GT 721
            ||
plant   453 GT 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cocoonNP_648764.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760
RRM2_TDP43 193..262 CDD:409761
RBP45BNP_172630.1 RRM1_SECp43_like 63..142 CDD:409780
RRM2_SECp43_like 154..233 CDD:409781 16/80 (20%)
RRM_SF 260..331 CDD:473069 12/74 (16%)
Blue background indicates that the domain is not in the aligned region.

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