Protein Alignment cocoon and AT5G55550

DIOPT Version :10

• Sequence 1: NP_648764.1
• Gene: cocoon / 39665
• FlyBaseID: FBgn0036496
• Length: 318
• Species: Drosophila melanogaster
• Sequence 2: NP_001331843.1
• Gene: AT5G55550 / 835649
• AraportID: AT5G55550
• Length: 507
• Species: Arabidopsis thaliana
• Alignment Length: 291
• Identity: 75/291 - (25%)
• Similarity: 115/291 - (39%)
• Gaps: 90/291 - (30%)

  Fly   109 LIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFVRFGSYDVQMHVLSKRHSIDG 173
            |.:.|:|::|.|:.||:||..|||||:|.|.:|..:|.::||||:.|....|...|:..:|.|||
plant     8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDG 72

  Fly   174 RW-CE------------------------------------------VKVPASRGM--------- 186
            |. |:                                          ::|.|.:.:
plant    73 RTVCDFNHFSIFQQNKQSSDLIATSSICVFESSLNLCFSKCKDQIYVLQVEAKKAVPRDDQQVLK 137

  Fly   187 --------------GNQEPGKVFVGRCTEDIEADDLREYFSKFGEVIDVFI------PKPFRAFS 231
                          |.....|:|||.....|..::.:.||.:||.:.||.:      .:| |.|.
plant   138 RHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRP-RGFG 201

  Fly   232 FVTF-LDPYVPRVVCGEKHIIKGVSVHVSTADKKNVQN----KNQLFQTNNYNNLDNNFKMQPAN 291
            |:|| .|..|.||:....|.:.|..|.|..|..|.:..    ::.|....||....|.   .|||
plant   202 FITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNR---MPAN 263

  Fly   292 NFRMHPANNFS-----MHSFNPHGYQMNRVM 317
            ::    .|||:     .:|..|.|.:.:.|:
plant   264 SY----FNNFAPGPGFYNSLGPVGRRFSPVI 290

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cocoon	NP_648764.1	TDP43_N	3..78	CDD:465833
		RRM1_TDP43	108..181	CDD:409760	31/114 (27%)
		RRM2_TDP43	193..262	CDD:409761	25/75 (33%)
AT5G55550	NP_001331843.1	RRM1_hnRNPA_hnRNPD_like	8..75	CDD:409763	30/66 (45%)
		ELAV_HUD_SF	19..>329	CDD:273741	71/280 (25%)
		RRM2_Hrp1p	158..235	CDD:409767	26/77 (34%)