Protein Alignment cocoon and AT5G47620

DIOPT Version :10

• Sequence 1: NP_648764.1
• Gene: cocoon / 39665
• FlyBaseID: FBgn0036496
• Length: 318
• Species: Drosophila melanogaster
• Sequence 2: NP_001190485.1
• Gene: AT5G47620 / 834812
• AraportID: AT5G47620
• Length: 453
• Species: Arabidopsis thaliana
• Alignment Length: 280
• Identity: 75/280 - (26%)
• Similarity: 124/280 - (44%)
• Gaps: 73/280 - (26%)

  Fly   109 LIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFVRFGSYDVQMHVLSKRHSIDG 173
            |.:.|:|:.|:|..||:||.::|:|::|.|.||..:|.::|||||.|...:|...|:..:|.|||
plant     8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDG 72

  Fly   174 R----------WC------------EVK--VP---------------ASRGMGNQEPGKVFVGRC 199
            :          .|            |.|  ||               .|.|..|.:  |:|||..
plant    73 KILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSK--KIFVGGL 135

  Fly   200 TEDIEADDLREYFSKFGEVIDVFI------PKPFRAFSFVTF-LDPYVPRVVCGEKHIIKGVSVH 257
            ...:...:.::||::||.:.||.:      .:| |.|.|::: .:..|.:|:....|.:.|..|.
plant   136 ASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRP-RGFGFISYDSEEAVDKVLQKTFHELNGKMVE 199

  Fly   258 VSTADKKNV---QNKNQL----FQTNNYNNLDN----NFKMQPANNFRMHPANNFS-----MHSF 306
            |..|..|::   ..:||:    |.|:..::|.|    .|...|.:.:.:.|...:|     ...|
plant   200 VKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGNRGGF 264

  Fly   307 NP--HGY------QMNRVMN 318
            :|  |||      :.|:..|
plant   265 SPFGHGYGIELNFEPNQTQN 284

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cocoon	NP_648764.1	TDP43_N	3..78	CDD:465833
		RRM1_TDP43	108..181	CDD:409760	31/95 (33%)
		RRM2_TDP43	193..262	CDD:409761	20/75 (27%)
AT5G47620	NP_001190485.1	RRM_SF	8..73	CDD:473069	27/64 (42%)
		RRM2_Hrp1p	129..206	CDD:409767	21/77 (27%)