Sequence 1: | NP_001261874.1 | Gene: | cocoon / 39665 | FlyBaseID: | FBgn0036496 | Length: | 318 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001154290.1 | Gene: | AT4G36960 / 829850 | AraportID: | AT4G36960 | Length: | 379 | Species: | Arabidopsis thaliana |
Alignment Length: | 306 | Identity: | 69/306 - (22%) |
---|---|---|---|
Similarity: | 106/306 - (34%) | Gaps: | 92/306 - (30%) |
- Green bases have known domain annotations that are detailed below.
Fly 44 NVDTKAVRGVRSNEGRL--------YSPSEETGWGEYHYFCVFPKKNKRQSEDNLEN-------S 93
Fly 94 TAKTKRTEAHLRCFDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFVRFGSY 158
Fly 159 DVQMHVLSKRHSIDGRWCEVK-------------------------------------------- 179
Fly 180 ------------------------VPASRGMGNQEPGKVFVGRCTEDIEADDLREYFSKFGEVID 220
Fly 221 VFIPKP-----FRAFSFVTFLDPYVPRVVCGEKHIIKGVSVHVSTA 261 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
cocoon | NP_001261874.1 | RRM1_TDP43 | 108..184 | CDD:240767 | 21/143 (15%) |
RRM2_TDP43 | 193..262 | CDD:240768 | 30/74 (41%) | ||
AT4G36960 | NP_001154290.1 | RRM_SF | 4..77 | CDD:418427 | 12/63 (19%) |
PABP-1234 | 5..>378 | CDD:130689 | 69/306 (23%) | ||
RRM_SF | 91..166 | CDD:418427 | 20/74 (27%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |