Protein Alignment cocoon and AT4G26650

DIOPT Version :10

• Sequence 1: NP_648764.1
• Gene: cocoon / 39665
• FlyBaseID: FBgn0036496
• Length: 318
• Species: Drosophila melanogaster
• Sequence 2: NP_567753.1
• Gene: AT4G26650 / 828772
• AraportID: AT4G26650
• Length: 455
• Species: Arabidopsis thaliana
• Alignment Length: 287
• Identity: 80/287 - (27%)
• Similarity: 122/287 - (42%)
• Gaps: 64/287 - (22%)

  Fly    79 PKKNKRQSEDNLENSTAKTKRTEAHLRCFDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTR 143
            |::.|.:|..:|..                |.:.|:|::|.|:.|:|||..|||:|:|.|.:|..
plant     3 PEEQKMESASDLGK----------------LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRT 51

  Fly   144 SGHSKGFGFVRFGSYDVQMHVLSKRHSIDGRWCEVK--------------------VPASRG--M 186
            :|.::||||:.|....|...|:..:|.||||..|.|                    :..|.|  .
plant    52 TGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNG 116

  Fly   187 GNQEPGKVFVGRCTEDIEADDLREYFSKFGEVIDVFI------PKPFRAFSFVTF-LDPYVPRVV 244
            |.....|:|||.....|...:.:.||.:||.:.||.:      .:| |.|.|:|| .:..|..|:
plant   117 GGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRP-RGFGFITFDSEESVDMVL 180

  Fly   245 CGEKHIIKGVSVHVSTADKKNVQ----NKNQLF-QTNNYNNLDNN------FKMQPA--NNFRMH 296
            ....|.:.|..|.|..|..|.:.    |::.|. ..|||..:.|.      |...|.  ||..:.
plant   181 HKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSFPPGYNNNNLG 245

  Fly   297 PANNFS-----MHSFNPHGYQMNRVMN 318
            .|..||     .::|:..|..:|:.:|
plant   246 SAGRFSPIGSGRNAFSSFGLGLNQELN 272

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cocoon	NP_648764.1	TDP43_N	3..78	CDD:465833
		RRM1_TDP43	108..181	CDD:409760	31/92 (34%)
		RRM2_TDP43	193..262	CDD:409761	23/75 (31%)
AT4G26650	NP_567753.1	RRM1_hnRNPA_hnRNPD_like	17..87	CDD:409763	30/69 (43%)
		RRM2_Hrp1p	123..200	CDD:409767	24/77 (31%)
		ser_rich_anae_1	<204..>385	CDD:468206	17/69 (25%)