DRSC/TRiP Functional Genomics Resources

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Protein Alignment cocoon and AT4G14300

DIOPT Version :10

Sequence 1:NP_648764.1 Gene:cocoon / 39665 FlyBaseID:FBgn0036496 Length:318 Species:Drosophila melanogaster
Sequence 2:NP_193166.2 Gene:AT4G14300 / 827071 AraportID:AT4G14300 Length:411 Species:Arabidopsis thaliana


Alignment Length:239 Identity:70/239 - (29%)
Similarity:103/239 - (43%) Gaps:38/239 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 LIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFVRFGSYDVQMHVLSKRHSIDG 173
            |.|.|:|:.|.|..|||:|..||:|.:|.:.:|..:|..:|||||.|....|...||.::||||.
plant     8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEKHSIDT 72

  Fly   174 RWCEVKVPASR-------------------GMGNQEPGKVFVGRCTEDIEADDLREYFSKFGEVI 219
            |..:||...||                   |....:..|:|||.....:..::.|:||..:|.|.
plant    73 REVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVT 137

  Fly   220 DVFI------PKPFRAFSFVTF-LDPYVPRVVCGEKHIIKGVSVHVSTADKKNVQ---------- 267
            ||.|      .:| |.|.||:| .:..|..|:....|.:.|..|.|..|..|:..          
plant   138 DVAIMYDQATNRP-RGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGGGGRSMGG 201

  Fly   268 NKNQLFQTNNYNNLDNNFKMQPANNFRMHPANNFSMHSFNPHGY 311
            ..:..:|....|....:.:|. :|.|..|.:....:.|:...||
plant   202 GGSGGYQGYGGNESSYDGRMD-SNRFLQHQSVGNGLPSYGSSGY 244

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cocoonNP_648764.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 32/71 (45%)
RRM2_TDP43 193..262 CDD:409761 24/75 (32%)
AT4G14300NP_193166.2 RRM1_hnRNPA_hnRNPD_like 8..78 CDD:409763 30/69 (43%)
RRM2_Hrp1p 111..188 CDD:409767 25/77 (32%)
Blue background indicates that the domain is not in the aligned region.

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