DRSC/TRiP Functional Genomics Resources

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Protein Alignment cocoon and AT2G46780

DIOPT Version :10

Sequence 1:NP_648764.1 Gene:cocoon / 39665 FlyBaseID:FBgn0036496 Length:318 Species:Drosophila melanogaster
Sequence 2:NP_182201.4 Gene:AT2G46780 / 819291 AraportID:AT2G46780 Length:336 Species:Arabidopsis thaliana


Alignment Length:245 Identity:62/245 - (25%)
Similarity:94/245 - (38%) Gaps:67/245 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 NSTAKTKRTEAHLRCFDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFVRFG 156
            |:|..||.|:       :.|.||::.|....:|.|||.:|::|:|.:..|..:|.|||:|||.|.
plant    14 NNTTDTKLTK-------IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFK 71

  Fly   157 SYDVQMHVLSKRHS-IDGRWCEVKVPASRGMGNQEP-----GKVFVGRCTEDIEADDLREYFSKF 215
            ..:..|......:. ||||.....:..   :|.|:|     .:...||             |...
plant    72 EAEAAMRACQNMNPVIDGRRANCNLAC---LGAQKPRPPTSPRHGTGR-------------FRSP 120

  Fly   216 GEVIDVFIPKP-FRAFS----FV---------TFLDPYVPRVVCGEKHIIKGVSVHVSTADKKNV 266
            |..:.:..|.| ||..|    ||         .|..||       ..:...|.|           
plant   121 GSGVGLVAPSPQFRGSSSSSAFVHQQQQQHTAQFPFPY-------STYGFSGYS----------- 167

  Fly   267 QNKNQLFQTNNYNNLDNNFKMQPANNFRMHP-ANNFSM-HSFNPHGYQMN 314
              :..::..|.||:  :.:..|..:.:..|| |.:..| |.|.|:..|.|
plant   168 --QEGMYPMNYYNH--HLYGGQQFSPYMGHPSAGSTGMFHGFYPYYPQYN 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cocoonNP_648764.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 25/73 (34%)
RRM2_TDP43 193..262 CDD:409761 16/82 (20%)
AT2G46780NP_182201.4 RRM_RBM24_RBM38_like 22..97 CDD:409818 26/81 (32%)
PABP-1234 <38..252 CDD:130689 53/214 (25%)
Blue background indicates that the domain is not in the aligned region.

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