DRSC/TRiP Functional Genomics Resources

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Protein Alignment cocoon and Hnrnpd

DIOPT Version :10

Sequence 1:NP_648764.1 Gene:cocoon / 39665 FlyBaseID:FBgn0036496 Length:318 Species:Drosophila melanogaster
Sequence 2:NP_077380.2 Gene:Hnrnpd / 79256 RGDID:620365 Length:353 Species:Rattus norvegicus


Alignment Length:244 Identity:69/244 - (28%)
Similarity:120/244 - (49%) Gaps:16/244 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 NKRQSEDNLENSTAK-TKRTEAHLRCFDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSG 145
            :|.:.::...||:.: |:...|....:.:.:.|||::||::||::||..:||||...:|.|..:|
  Rat    69 SKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITG 133

  Fly   146 HSKGFGFVRF-GSYDVQMHVLSKRHSIDGRWCEVKVPASRGMGNQEP-GKVFVGRCTEDIEADDL 208
            .|:|||||.| .|..|...:..|.|.::|:..:.|  .::.|..:|| .|:|||..:.|...:.:
  Rat   134 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPK--RAKAMKTKEPVKKIFVGGLSPDTPEEKI 196

  Fly   209 REYFSKFGEVIDVFIP-----KPFRAFSFVTFLDPYVPRVVCGEKHIIKGVS-VHVSTA-DKKNV 266
            ||||..||||..:.:|     ...|.|.|:||.:....:.:..:|:...|:| ..:..| .|:..
  Rat   197 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQY 261

  Fly   267 QNKNQLFQTNNYNNLDNNFKMQPANNFRMHPAN----NFSMHSFNPHGY 311
            |.:.|......:..........|:.|:....:|    .:..:.:|..||
  Rat   262 QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGSYGYNSQGY 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cocoonNP_648764.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 29/73 (40%)
RRM2_TDP43 193..262 CDD:409761 23/75 (31%)
HnrnpdNP_077380.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..89 4/19 (21%)
CBFNT <55..76 CDD:311868 1/6 (17%)
RRM1_hnRNPD 97..170 CDD:410150 29/74 (39%)
RRM2_hnRNPD 181..255 CDD:241027 22/73 (30%)
Blue background indicates that the domain is not in the aligned region.

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