Protein Alignment cocoon and Rbm31y

DIOPT Version :10

• Sequence 1: NP_648764.1
• Gene: cocoon / 39665
• FlyBaseID: FBgn0036496
• Length: 318
• Species: Drosophila melanogaster
• Sequence 2: NP_083246.1
• Gene: Rbm31y / 74484
• MGIID: 1921734
• Length: 565
• Species: Mus musculus
• Alignment Length: 198
• Identity: 59/198 - (29%)
• Similarity: 94/198 - (47%)
• Gaps: 16/198 - (8%)

  Fly   109 LIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFVRF-GSYDVQMHVLSKRHSID 172
            :.:.|||...::|.|.||...:|:::...||.|..:|.|:|||||.| .|..|:..:..|.|.:|
Mouse    35 MFIGGLSQEMSKQVLLEYLSKFGEIIDFIIKTDPNTGLSRGFGFVLFKDSATVEKVLQVKDHKVD 99

  Fly   173 GRWCEVKVPASRGMGNQEPG-KVFVGRCTEDIEADDLREYFSKFGEVIDVFIP-----KPFRAFS 231
            |:..|.|  .::.:.:|.|. |:|||.....:..:.:|.||..||::..:.:|     :..|||.
Mouse   100 GKKIEFK--RAKALESQFPNKKIFVGGLNPRLSEEKIRAYFGTFGQIEAIELPLCSDTRERRAFG 162

  Fly   232 FVTFLDP-YVPRVVCGEKHIIKGVSVHVSTADKKNVQNKNQLFQTNNYNNLDNNFKMQPA----N 291
            |:.::|. .|.:|:....|.|......|..|..|  :|..:..........|...|..||    |
Mouse   163 FIKYMDENSVRKVLENRYHFIGSSRCEVKMAYPK--ENPARQLSKRKAIAKDRTRKSVPAVELEN 225

  Fly   292 NFR 294
            |:|
Mouse   226 NWR 228

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cocoon	NP_648764.1	TDP43_N	3..78	CDD:465833
		RRM1_TDP43	108..181	CDD:409760	27/72 (38%)
		RRM2_TDP43	193..262	CDD:409761	20/74 (27%)
Rbm31y	NP_083246.1	RRM_SF	34..109	CDD:473069	27/75 (36%)
		RRM_SF	119..193	CDD:473069	20/73 (27%)