DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment cocoon and AT5G08695

DIOPT Version :9

Sequence 1:	NP_001261874.1	Gene:	cocoon / 39665	FlyBaseID:	FBgn0036496	Length:	318	Species:	Drosophila melanogaster
Sequence 2:	NP_001119193.1	Gene:	AT5G08695 / 6241377	AraportID:	AT5G08695	Length:	690	Species:	Arabidopsis thaliana

Alignment Length:	245	Identity:	52/245 - (21%)
Similarity:	90/245 - (36%)	Gaps:	61/245 - (24%)

- Green bases have known domain annotations that are detailed below.

  Fly    79 PKKNKRQSEDNLENSTAKTKRTEAHLRCFDLIVLGLSYNTTEQDLRE----YFETYGDVVKAEIK 139
            |.|.||...|:.:...:|.....:.:..|...:.....:..|.|.||    .|...|:|....:.
plant   141 PNKAKRSFLDSKKTRKSKVGDDVSDMEYFKSRIKKNLDSDCETDSREDAINVFPIDGEVKADRVD 205

  Fly   140 KDTRSGHSKGFGFVRFGSYDVQMHVLSKRHSIDGRWCEVKVPASRGMGNQEPGKVFVGRCTEDIE 204
            ||.                             ||...||:...|..:  .:.|::||........
plant   206 KDD-----------------------------DGHAMEVEADGSDDV--LDAGRLFVHGLPYSTT 239

  Fly   205 ADDLREYFSKFGEVIDVFI-----PKPFRAFSFVTFLDPYVPRVVCG--EKHIIKGVSVHVSTAD 262
            .::|.|:|||||::.:|.:     .:..|..:||.:|.|...::...  :|...:|.::|:..|.
plant   240 EEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDKLDKLPFQGRTLHILPAK 304

  Fly   263 KKNVQNKNQLFQTNNYNNLDNNFKMQPA---------------NNFRMHP 297
            .:.:..|    |.:|.:||..:||.:..               |:|.|.|
plant   305 PRAMSAK----QVDNSSNLPKSFKKEREEQRKASEACGNTNAWNSFFMRP 350

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
cocoon	NP_001261874.1	RRM1_TDP43	108..184	CDD:240767	13/79 (16%)
cocoon	NP_001261874.1	RRM2_TDP43	193..262	CDD:240768	18/75 (24%)
AT5G08695	NP_001119193.1	RRM1_MRD1	4..79	CDD:241009
		ELAV_HUD_SF	6..300	CDD:273741	39/189 (21%)
		RRM3_RBM19_RRM2_MRD1	228..301	CDD:240762	18/72 (25%)
		ELAV_HUD_SF	229..618	CDD:273741	30/126 (24%)
		RRM4_RBM19_RRM3_MRD1	421..492	CDD:240763
		RRM_SF	536..615	CDD:302621
		RRM_SF	635..>661	CDD:302621
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR48033
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.100