DRSC/TRiP Functional Genomics Resources

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Protein Alignment cocoon and msi1b

DIOPT Version :10

Sequence 1:NP_648764.1 Gene:cocoon / 39665 FlyBaseID:FBgn0036496 Length:318 Species:Drosophila melanogaster
Sequence 2:XP_073765489.1 Gene:msi1b / 541389 ZFINID:ZDB-GENE-050320-86 Length:349 Species:Danio rerio


Alignment Length:196 Identity:58/196 - (29%)
Similarity:93/196 - (47%) Gaps:23/196 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 SEDNLENSTAKTKRTEAHLRCFDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGF 150
            |:.||.:|.:      .|..| .:.:.|||:.||::.|::||..:|:|.::.:.:|..:..|:||
Zfish     6 SQSNLSSSDS------PHDPC-KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGF 63

  Fly   151 GFVRF-GSYDVQMHVLSKRHSIDGRWCEVKVPASRGMGNQEP------GKVFVGRCTEDIEADDL 208
            |||.| ....|...:...||.:|.:..:.||...|   ..:|      .|:|||..:.:...:|:
Zfish    64 GFVTFVDQAGVDKVLAQTRHELDSKTIDPKVAFPR---RAQPKLVTRTKKIFVGGLSVNTTIEDV 125

  Fly   209 REYFSKFGEVIDVFI-----PKPFRAFSFVTFLDPYVPRVVCG-EKHIIKGVSVHVSTADKKNVQ 267
            ::||.:||:|.|..:     ....|.|.||||.:..|...||. ..|.|....|....|..|.|.
Zfish   126 KQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVM 190

  Fly   268 N 268
            :
Zfish   191 S 191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cocoonNP_648764.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 23/73 (32%)
RRM2_TDP43 193..262 CDD:409761 23/74 (31%)
msi1bXP_073765489.1 None
Blue background indicates that the domain is not in the aligned region.

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