DRSC/TRiP Functional Genomics Resources

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Protein Alignment cocoon and LOC4576768

DIOPT Version :10

Sequence 1:NP_648764.1 Gene:cocoon / 39665 FlyBaseID:FBgn0036496 Length:318 Species:Drosophila melanogaster
Sequence 2:XP_001237856.3 Gene:LOC4576768 / 4576768 VectorBaseID:AGAMI1_002317 Length:361 Species:Anopheles gambiae


Alignment Length:212 Identity:58/212 - (27%)
Similarity:102/212 - (48%) Gaps:34/212 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 KNKRQSEDNLENSTAKT-------------------KRTEAHLRCFD--LIVLGLSYNTTEQDLR 124
            :|:..||||:..:...:                   ..::::.|..:  |.|.|||:.|||:|||
Mosquito    21 QNQMDSEDNMSGNNGASGGNGGGGGGGGGGGGGGGGSDSQSNARDDERKLFVGGLSWETTEKDLR 85

  Fly   125 EYFETYGDVVKAEIKKDTRSGHSKGFGFVRFGSYD-VQMHVLSKRHSIDGRWCEVKVPASRGMGN 188
            |:|..||::....:|.|..:|.|:||.|:.:.:.| :...|.:..|.::.:..:.|...:|    
Mosquito    86 EHFGQYGEIESINVKTDPNTGRSRGFAFIVYKASDSIDKVVAAGEHVLNNKKVDPKRAKAR---- 146

  Fly   189 QEPGKVFVGRCTEDIEADDLREYFSKFGEVIDVFIP-----KPFRAFSFVTFLD-PYVPRVVCGE 247
              |||:|||..|.||..::::.:|.:||.:::|.:|     ...:.|.|:|:.. ..|..::...
Mosquito   147 --PGKIFVGGLTSDISDEEIKTFFGQFGTIVEVELPFDKQKNQRKGFCFITYESVQVVNELLKTP 209

  Fly   248 KHIIKGVSVHVSTADKK 264
            |..|.|..|.|..|..|
Mosquito   210 KQTIAGKEVDVKKATPK 226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cocoonNP_648764.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 26/75 (35%)
RRM2_TDP43 193..262 CDD:409761 21/74 (28%)
LOC4576768XP_001237856.3 None
Blue background indicates that the domain is not in the aligned region.

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