Sequence 1: | NP_001261874.1 | Gene: | cocoon / 39665 | FlyBaseID: | FBgn0036496 | Length: | 318 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001247401.1 | Gene: | mod / 43764 | FlyBaseID: | FBgn0002780 | Length: | 542 | Species: | Drosophila melanogaster |
Alignment Length: | 289 | Identity: | 72/289 - (24%) |
---|---|---|---|
Similarity: | 104/289 - (35%) | Gaps: | 88/289 - (30%) |
- Green bases have known domain annotations that are detailed below.
Fly 6 VSEKEGDE--PIELP------------AEED--------GTLLLST------------------- 29
Fly 30 ---LQAQFPESSGLQ-YRNVDTKAVRGVRSNEGRLYSPSEETGWGEYHYFCVFPKKNKRQS-EDN 89
Fly 90 LENSTAKTKRTEAHLRCFDLIVLGL-SYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFV 153
Fly 154 RFGSYDVQMHVLSKRHSID--GRWCEVKVPASRGMGN--------QEPGKVFVGRCTEDIEADDL 208
Fly 209 REYFSKFGEV--IDVFIPKPFRAFSFVTF 235 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
cocoon | NP_001261874.1 | RRM1_TDP43 | 108..184 | CDD:240767 | 23/78 (29%) |
RRM2_TDP43 | 193..262 | CDD:240768 | 17/45 (38%) | ||
mod | NP_001247401.1 | RRM_SF | 177..244 | CDD:302621 | 17/79 (22%) |
RRM_SF | 260..327 | CDD:240668 | 22/71 (31%) | ||
RRM_SF | 342..411 | CDD:240668 | 18/52 (35%) | ||
RRM_SF | 422..>465 | CDD:302621 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C45439639 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.930 |