DRSC/TRiP Functional Genomics Resources

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Protein Alignment cocoon and rbm34

DIOPT Version :10

Sequence 1:NP_648764.1 Gene:cocoon / 39665 FlyBaseID:FBgn0036496 Length:318 Species:Drosophila melanogaster
Sequence 2:NP_001002382.1 Gene:rbm34 / 436655 ZFINID:ZDB-GENE-040718-77 Length:411 Species:Danio rerio


Alignment Length:175 Identity:47/175 - (26%)
Similarity:70/175 - (40%) Gaps:32/175 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 HLRCFDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFVRFGSYD-------- 159
            |.|  .:.|..|.|:.:|..|:.:|:..|::....:.:|..||..||||:|.|.|.|        
Zfish   250 HKR--SIFVGNLPYDISELPLQNHFQECGNIEAVRLVRDRDSGMGKGFGYVLFESPDSVMLALKL 312

  Fly   160 ----VQMHVLSKRHSIDGRWCEVKVPASRGMGNQEPGKVFVGRCTEDIEADDLREYFSKFGEVID 220
                :|...:..:.|:. :..|.|.|..|....|..|....|. .::...:..|:.|:|...   
Zfish   313 NGSTLQQRKIRVKRSVK-KEKEKKTPPGRKAEGQRTGGGLKGP-KQEFRNNTGRKNFTKNPR--- 372

  Fly   221 VFIPKPFRAFSFV-TFLDPYVPRVVCGE------KHIIKGVSVHV 258
               .||.:|.||. ...||...|   |:      ||..|..|.||
Zfish   373 ---NKPTQASSFKGEMADPTAKR---GKPQKKKFKHKKKKHSGHV 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cocoonNP_648764.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 22/84 (26%)
RRM2_TDP43 193..262 CDD:409761 19/73 (26%)
rbm34NP_001002382.1 RRM1_RBM34 149..240 CDD:409828
RRM2_RBM34 253..325 CDD:409829 19/71 (27%)
Blue background indicates that the domain is not in the aligned region.

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