DRSC/TRiP Functional Genomics Resources

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Protein Alignment cocoon and eIF3g2

DIOPT Version :10

Sequence 1:NP_648764.1 Gene:cocoon / 39665 FlyBaseID:FBgn0036496 Length:318 Species:Drosophila melanogaster
Sequence 2:NP_650887.1 Gene:eIF3g2 / 42422 FlyBaseID:FBgn0038796 Length:273 Species:Drosophila melanogaster


Alignment Length:122 Identity:29/122 - (23%)
Similarity:49/122 - (40%) Gaps:28/122 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 NVDTKAVRGVRSNEGRLYSPSEETGWGEYHYFCVFP----------KKNKRQSEDNLENSTAKTK 98
            ::|:|.|...::|.....:.|:.:..|:|    |.|          .||..:..|..::|..:  
  Fly   138 SMDSKTVMETKANAAAAAAISDPSKTGKY----VPPFMKDGGGISGSKNWGRGRDRDDSSAVR-- 196

  Fly    99 RTEAHLRCFDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFVRF 155
                        :..||.:.||.||.|..:..|...|..:.::..||..|||.:|.|
  Fly   197 ------------ISNLSESMTETDLEELVKKIGPHTKMYLAREKNSGLCKGFAYVHF 241

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cocoonNP_648764.1 TDP43_N 3..78 CDD:465833 7/33 (21%)
RRM1_TDP43 108..181 CDD:409760 16/48 (33%)
RRM2_TDP43 193..262 CDD:409761
eIF3g2NP_650887.1 eIF3g 28..137 CDD:463545
RRM_eIF3G_like 195..269 CDD:409842 16/61 (26%)
Blue background indicates that the domain is not in the aligned region.

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