Protein Alignment cocoon and sqd

DIOPT Version :9

• Sequence 1: NP_001261874.1
• Gene: cocoon / 39665
• FlyBaseID: FBgn0036496
• Length: 318
• Species: Drosophila melanogaster
• Sequence 2: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Alignment Length: 194
• Identity: 58/194 - (29%)
• Similarity: 98/194 - (50%)
• Gaps: 22/194 - (11%)

  Fly    86 SEDNLENSTAKTKRTEAHLRCFDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGF 150
            |.||  .|.|..:|.:..    .|.|.|||:.|||::||::|..||::....:|.|.::|.|:||
  Fly    41 SSDN--QSAASGQRDDDR----KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGF 99

  Fly   151 GFVRFGSYD-VQMHVLSKRHSIDGRWCEVKVPASRGMGNQEPGKVFVGRCTEDIEADDLREYFSK 214
            .|:.|.:.: :.....:..|.|:.:..:.|...:|      .||:|||..|.:|..::::.||.:
  Fly   100 AFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKAR------HGKIFVGGLTTEISDEEIKTYFGQ 158

  Fly   215 FGEVIDVFIP-----KPFRAFSFVTF-LDPYVPRVVCGEKHIIKGVSVHVSTADKKNVQNKNQL 272
            ||.:::|.:|     ...:.|.|:|| .:..|..::...|..|.|..|.|..|..|   .:||:
  Fly   159 FGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPK---PENQM 219

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cocoon	NP_001261874.1	RRM1_TDP43	108..184	CDD:240767	24/76 (32%)
		RRM2_TDP43	193..262	CDD:240768	22/74 (30%)
sqd	NP_731825.1	RRM_SF	58..129	CDD:302621	23/70 (33%)
		RRM2_hnRNPD_like	137..211	CDD:240775	22/73 (30%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR48033
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	2.010