DRSC/TRiP Functional Genomics Resources

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Protein Alignment cocoon and rbm39a

DIOPT Version :10

Sequence 1:NP_648764.1 Gene:cocoon / 39665 FlyBaseID:FBgn0036496 Length:318 Species:Drosophila melanogaster
Sequence 2:NP_001012304.1 Gene:rbm39a / 406251 ZFINID:ZDB-GENE-040426-2852 Length:523 Species:Danio rerio


Alignment Length:258 Identity:55/258 - (21%)
Similarity:90/258 - (34%) Gaps:71/258 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 KKNKRQS-EDNLENSTAKTKRTEAHLRCFDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTR 143
            :||:..: .:||:..:|...|         |.|..|.:|.||..||..||.:|.:...::..|:.
Zfish   227 EKNRAAALANNLQKGSAGPMR---------LYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSE 282

  Fly   144 SGHSKGFGFVRFGSYDVQMHVLSKRHSID--GRWCEVKVPASRGMGNQEPGKVFVGRCTEDIEA- 205
            :|.|||:||:.|...:.....|.:.:..:  ||                |.|  ||..||..:| 
Zfish   283 TGRSKGYGFITFSDAECAKKALEQLNGFELAGR----------------PMK--VGHVTERTDAS 329

  Fly   206 --------DDLR------------EYFSKFGEVIDVFIPKPFRAFSFVTFLDPYVPRVVCGEKHI 250
                    |:|.            :..::..|...:.||.                    ..:..
Zfish   330 TASSFLDNDELERTGIDLGTTGRLQLMARLAEGTGLQIPP--------------------AAQQA 374

  Fly   251 IKGVSVHVSTADKKNVQNKNQLFQTNNYNNLDNNFKMQPANNFRMHPANNFSMHSFNPHGYQM 313
            ::.....|:.|......|....|..|...|...|...||........:|.|:.:|.|.||:::
Zfish   375 LQMSGSMVAMAAATAAMNPGLSFNINVPTNQALNLPSQPIATHCFQLSNMFNPNSENDHGWEI 437

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cocoonNP_648764.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 22/74 (30%)
RRM2_TDP43 193..262 CDD:409761 12/89 (13%)
rbm39aNP_001012304.1 SF-CC1 91..511 CDD:273721 55/258 (21%)
Blue background indicates that the domain is not in the aligned region.

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