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Protein Alignment cocoon and hnrnpa1a

DIOPT Version :10

Sequence 1:	NP_648764.1	Gene:	cocoon / 39665	FlyBaseID:	FBgn0036496	Length:	318	Species:	Drosophila melanogaster
Sequence 2:	NP_001428354.1	Gene:	hnrnpa1a / 393467	ZFINID:	ZDB-GENE-040426-1546	Length:	417	Species:	Danio rerio

Alignment Length:	212	Identity:	68/212 - (32%)
Similarity:	109/212 - (51%)	Gaps:	23/212 - (10%)

- Green bases have known domain annotations that are detailed below.

  Fly    77 VFPKKNKRQSEDNLENSTA------KTKRTEAHLRCFDLIVLGLSYNTTEQDLREYFETYGDVVK 135
            :.||| :|::|..:.:...      :|.|....||  .|.:.|||:.||::.||.:||.:|.:..
Zfish     5 ITPKK-EREAESAVSHRVTAMSKEQQTPREPEQLR--KLFIGGLSFETTDESLRAHFEQWGTLTD 66

  Fly   136 AEIKKDTRSGHSKGFGFVRFGSY-DVQMHVLSKRHSIDGRWCEVKVPASRGMGNQEPG------K 193
            ..:.:|..:..|:|||||.:.|. :|...:.::.|.:|||..|.|...|| ..:.:||      |
Zfish    67 CVVMRDPNTKRSRGFGFVTYSSVGEVDAAMDARPHKVDGRAVEPKRAVSR-EDSSKPGAHSTVKK 130

  Fly   194 VFVGRCTEDIEADDLREYFSKFGEVIDVFI-----PKPFRAFSFVTFLD-PYVPRVVCGEKHIIK 252
            :|||...||.:.:.|||||.:||::.:|.|     ....|.|:|:||.| ..|.|:|..:.|.:.
Zfish   131 MFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQKYHTVN 195

  Fly   253 GVSVHVSTADKKNVQNK 269
            |.:..|..|..:...|:
Zfish   196 GHNCEVRKALSREEMNR 212

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.