DRSC/TRiP Functional Genomics Resources

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Protein Alignment cocoon and rbm28

DIOPT Version :10

Sequence 1:NP_648764.1 Gene:cocoon / 39665 FlyBaseID:FBgn0036496 Length:318 Species:Drosophila melanogaster
Sequence 2:NP_956615.2 Gene:rbm28 / 393291 ZFINID:ZDB-GENE-040426-960 Length:856 Species:Danio rerio


Alignment Length:204 Identity:55/204 - (26%)
Similarity:81/204 - (39%) Gaps:55/204 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 KKNKRQSED--------------NLENSTAKTKRTEAHLRCFDLIVLGLSYNTTEQDLREYFETY 130
            |||.:.::|              |.|...:.||:.|...    ||:..||:...:.:|::.|..:
Zfish    87 KKNAKTNKDSGDTEESQKSGETKNTEKIPSPTKKKENGW----LIIRNLSFKCEDDELKQIFSKF 147

  Fly   131 GDVVKAEI--KKDTRSGHSKGFGFVRFG--SYDVQMHVLSKRHSIDGR-----WCEVKVPASRGM 186
            |.|::..|  |.|   |..|||.||:|.  |...:......|.:|..|     |......::...
Zfish   148 GTVLETRIPLKPD---GKKKGFAFVQFKCVSEAEKARAAMNRKAIRDRPVEVDWTTSNTESADPE 209

  Fly   187 GNQEPGKVFVGRCTEDI---------------------EADDLREYFSKFGEVIDVFIP-KP--- 226
            ..:||.|......||..                     |.|||::.||:||.|::..|| ||   
Zfish   210 DTEEPHKAEETTSTEKFKGIRKIKLKSRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGK 274

  Fly   227 FRAFSFVTF 235
            .|.|:||.|
Zfish   275 KRGFAFVLF 283

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cocoonNP_648764.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 23/81 (28%)
RRM2_TDP43 193..262 CDD:409761 21/68 (31%)
rbm28NP_956615.2 None
Blue background indicates that the domain is not in the aligned region.

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