DRSC/TRiP Functional Genomics Resources

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Protein Alignment cocoon and lark

DIOPT Version :10

Sequence 1:NP_648764.1 Gene:cocoon / 39665 FlyBaseID:FBgn0036496 Length:318 Species:Drosophila melanogaster
Sequence 2:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster


Alignment Length:166 Identity:46/166 - (27%)
Similarity:69/166 - (41%) Gaps:27/166 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 FDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFVRFGSYDVQMHVLSKRHSI 171
            |.|.:..|...|...:||..||.||.||:.::.|:        :|||...:.......:...:..
  Fly     7 FKLFIGNLDEKTQATELRALFEKYGTVVECDVVKN--------YGFVHMETEQQGRDAIQNLNGY 63

  Fly   172 DGRWCEVKVPA--SRGMGNQEPGKVFVGRCTEDIEADDLREYFSKFGEVIDVFIPKPFRAFSFVT 234
            ......:||.|  ||...|....|:|||..|:...|.::||.|.|:|.|::..|   .|.:.||.
  Fly    64 TLNEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDI---VRNYGFVH 125

  Fly   235 F---------LDPYVPRVVCGEKHIIKGVSVHVSTA 261
            .         :.....|||.|:.     :.|.|||:
  Fly   126 LDCVGDVQDAIKELNGRVVDGQP-----LKVQVSTS 156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cocoonNP_648764.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 16/72 (22%)
RRM2_TDP43 193..262 CDD:409761 24/78 (31%)
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 16/72 (22%)
RRM1_2_CoAA_like 87..152 CDD:409779 20/72 (28%)
hnRNP-R-Q <88..>258 CDD:273732 23/77 (30%)
Blue background indicates that the domain is not in the aligned region.

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