Protein Alignment cocoon and lark

DIOPT Version :9

• Sequence 1: NP_001261874.1
• Gene: cocoon / 39665
• FlyBaseID: FBgn0036496
• Length: 318
• Species: Drosophila melanogaster
• Sequence 2: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Alignment Length: 166
• Identity: 46/166 - (27%)
• Similarity: 69/166 - (41%)
• Gaps: 27/166 - (16%)

  Fly   107 FDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFVRFGSYDVQMHVLSKRHSI 171
            |.|.:..|...|...:||..||.||.||:.::.|:        :|||...:.......:...:..
  Fly     7 FKLFIGNLDEKTQATELRALFEKYGTVVECDVVKN--------YGFVHMETEQQGRDAIQNLNGY 63

  Fly   172 DGRWCEVKVPA--SRGMGNQEPGKVFVGRCTEDIEADDLREYFSKFGEVIDVFIPKPFRAFSFVT 234
            ......:||.|  ||...|....|:|||..|:...|.::||.|.|:|.|::..|   .|.:.||.
  Fly    64 TLNEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDI---VRNYGFVH 125

  Fly   235 F---------LDPYVPRVVCGEKHIIKGVSVHVSTA 261
            .         :.....|||.|:.     :.|.|||:
  Fly   126 LDCVGDVQDAIKELNGRVVDGQP-----LKVQVSTS 156

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cocoon	NP_001261874.1	RRM1_TDP43	108..184	CDD:240767	18/77 (23%)
		RRM2_TDP43	193..262	CDD:240768	24/78 (31%)
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	16/72 (22%)
		RRM1_2_CoAA_like	87..152	CDD:409779	20/72 (28%)
		hnRNP-R-Q	<88..>258	CDD:273732	23/77 (30%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45439649
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.930