Protein Alignment cocoon and tardbpa

DIOPT Version :10

• Sequence 1: NP_648764.1
• Gene: cocoon / 39665
• FlyBaseID: FBgn0036496
• Length: 318
• Species: Drosophila melanogaster
• Sequence 2: XP_073794270.1
• Gene: tardbpa / 386630
• ZFINID: ZDB-GENE-031030-1
• Length: 401
• Species: Danio rerio
• Alignment Length: 314
• Identity: 151/314 - (48%)
• Similarity: 209/314 - (66%)
• Gaps: 17/314 - (5%)

  Fly     3 FVHVSEKEGDEPIELPAEEDGTLLLSTLQAQFPESSGLQYRNVDTKAVRGVRSNEGRLYSPSEET 67
            ::.|:|.|.:||:|:|:|||||:||||:.||||.:.||:||:..::.:||||..||.|::|  |.
Zfish     5 YIRVAEDENEEPMEIPSEEDGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHAP--EA 67

  Fly    68 GWGEYHYFCVFPKKNKRQSEDNLENSTAKTKRTEAHLRCFDLIVLGLSYNTTEQDLREYFETYGD 132
            .||...|...:||.|||:.::....|..|.||  ...:..|||||||.:.||||||::||.|:|:
Zfish    68 DWGNLVYVVNYPKDNKRKMDEMDAASAVKIKR--GIQKTSDLIVLGLPWKTTEQDLKDYFGTFGE 130

  Fly   133 VVKAEIKKDTRSGHSKGFGFVRFGSYDVQMHVLSKRHSIDGRWCEVKVPASR----GMGNQEP-- 191
            |:..::|:|.:||:|||||||||..|:.|:.|:|:||.||||||:.|:|.|:    ..|..||
Zfish   131 VIMVQVKRDAKSGNSKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKYFLEQAGPDEPMR 195

  Fly   192 -GKVFVGRCTEDIEADDLREYFSKFGEVIDVFIPKPFRAFSFVTFLDPYVPRVVCGEKHIIKGVS 255
             .||||||||||:.||:||::|.::|||.|||||||||||:||||.|..|.:.:|||..||||.|
Zfish   196 SRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGTS 260

  Fly   256 VHVSTADKKNVQNKNQLFQTNNYNNLDNNFKMQPANNFRMHPAN-NFSMHSFNP 308
            ||:|.|:.|: .|..|:.....:    ..:..|...:.|...:| ||...:.||
Zfish   261 VHISNAEPKH-NNSRQMMDRGRF----GGYGGQGFGSSRSPNSNVNFGALNLNP 309

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cocoon	NP_648764.1	TDP43_N	3..78	CDD:465833	36/74 (49%)
		RRM1_TDP43	108..181	CDD:409760	44/72 (61%)
		RRM2_TDP43	193..262	CDD:409761	46/68 (68%)
tardbpa	XP_073794270.1	None