DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment cocoon and CG1316

DIOPT Version :9

Sequence 1:	NP_001261874.1	Gene:	cocoon / 39665	FlyBaseID:	FBgn0036496	Length:	318	Species:	Drosophila melanogaster
Sequence 2:	NP_647887.1	Gene:	CG1316 / 38526	FlyBaseID:	FBgn0035526	Length:	470	Species:	Drosophila melanogaster

Alignment Length:	194	Identity:	50/194 - (25%)
Similarity:	83/194 - (42%)	Gaps:	34/194 - (17%)

- Green bases have known domain annotations that are detailed below.

  Fly   119 TEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFVRFG----SYDVQMHVLSKRHSIDGRWCEVK 179
            ||:|.||.|..||::....:.||..:..:||..:|:|.    :...|..:..|......|..:|.
  Fly    39 TEEDFREAFSPYGEIEDIWVVKDKHTQENKGIAYVKFSKTSDAAKAQEEMNGKTIGKMDRTLKVL 103

  Fly   180 VPASRGMGNQEPG-------KVFV---GRCTEDIEADDLREYFSKFGEVIDVFIPK------PFR 228
            |.|:|..|:.:..       ::|:   ...||    :|:||.||::|:|..|.|.|      | :
  Fly   104 VAANRNQGSNKSENEQEKYVRLFIVIPKTATE----EDIREEFSQWGDVESVTIVKEKNNGNP-K 163

  Fly   229 AFSFVTFLDPYVPRVV---CGEKHIIKGVSVHVSTADKKNVQNK----NQLFQTNNYNNLDNNF 285
            .|.:|.|...|...|.   |..|:.........||..:::...:    |.|:.::...|  :||
  Fly   164 GFGYVRFTKFYYAAVAFENCSAKYKAVFAEPKGSTRTQRDQYGRPSEDNPLYSSSGRGN--SNF 225

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
cocoon	NP_001261874.1	RRM1_TDP43	108..184	CDD:240767	20/68 (29%)
cocoon	NP_001261874.1	RRM2_TDP43	193..262	CDD:240768	23/80 (29%)
CG1316	NP_647887.1	RRM1_RBM45	25..105	CDD:240812	18/65 (28%)
		RRM2_RBM45	122..195	CDD:240813	21/77 (27%)
		RRM3_RBM45	267..339	CDD:240814
		RRM4_RBM45	383..449	CDD:240815
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45439641
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.930