DRSC/TRiP Functional Genomics Resources

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Protein Alignment cocoon and Rbm39

DIOPT Version :10

Sequence 1:NP_648764.1 Gene:cocoon / 39665 FlyBaseID:FBgn0036496 Length:318 Species:Drosophila melanogaster
Sequence 2:XP_006235393.1 Gene:Rbm39 / 362251 RGDID:1310071 Length:530 Species:Rattus norvegicus


Alignment Length:135 Identity:35/135 - (25%)
Similarity:56/135 - (41%) Gaps:30/135 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 KKNKRQS-EDNLENSTAKTKRTEAHLRCFDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTR 143
            :||:..: .:||:..:|...|         |.|..|.:|.||..||..||.:|.:...::..|:.
  Rat   231 EKNRAAAMANNLQKGSAGPMR---------LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSE 286

  Fly   144 SGHSKGFGFVRFGSYDVQMHVLSKRHSID--GRWCEVKVPASRGMGNQEPGKVFVGRCTEDIEAD 206
            :|.|||:||:.|...:.....|.:.:..:  ||                |.|  ||..||..:|.
  Rat   287 TGRSKGYGFITFSDSECAKKALEQLNGFELAGR----------------PMK--VGHVTERTDAS 333

  Fly   207 DLREY 211
            ....:
  Rat   334 SASSF 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cocoonNP_648764.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 22/74 (30%)
RRM2_TDP43 193..262 CDD:409761 6/19 (32%)
Rbm39XP_006235393.1 SF-CC1 46..518 CDD:273721 35/135 (26%)
Blue background indicates that the domain is not in the aligned region.

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