Protein Alignment cocoon and Hrb27C

DIOPT Version :9

• Sequence 1: NP_001261874.1
• Gene: cocoon / 39665
• FlyBaseID: FBgn0036496
• Length: 318
• Species: Drosophila melanogaster
• Sequence 2: NP_001162897.1
• Gene: Hrb27C / 33968
• FlyBaseID: FBgn0004838
• Length: 421
• Species: Drosophila melanogaster
• Alignment Length: 230
• Identity: 72/230 - (31%)
• Similarity: 105/230 - (45%)
• Gaps: 27/230 - (11%)

  Fly   109 LIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFVRFGSYDVQMHVLSK-RHSID 172
            |.|.|||:.||:::|..||..:||::...:.|:..||.|:|||||.|.......|||.. .|::|
  Fly     9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLD 73

  Fly   173 GRWCEVKVPASRGMGNQEPG---KVFVGRCTEDIEADDLREYFSKFGEVIDVFI-----PKPFRA 229
            ||..:.|....|.:...:.|   |||:|....::...|||.:|:::|:|.:|.|     .|..|.
  Fly    74 GRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRG 138

  Fly   230 FSFVTFLDPYVPRVVCGEKHI-IKGVSVHVSTA---DKKNVQNKNQLFQTNNYNNLDNNFK---- 286
            |.|::|.:......|..|::| :.|..|.:..|   |....||.|.......|..|.|...
  Fly   139 FGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRDGSGGQNSNNSTVGGAYGKLGNECSHWGP 203

  Fly   287 -------MQPANNFRMHPANNFSMHSFN--PHGYQ 312
                   ||..|.....|..|..:.:.|  | |||
  Fly   204 HHAPINMMQGQNGQMGGPPLNMPIGAPNMMP-GYQ 237

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cocoon	NP_001261874.1	RRM1_TDP43	108..184	CDD:240767	30/75 (40%)
		RRM2_TDP43	193..262	CDD:240768	23/77 (30%)
Hrb27C	NP_001162897.1	RRM1_DAZAP1	8..89	CDD:241018	31/79 (39%)
		RRM2_DAZAP1	94..173	CDD:240773	23/78 (29%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.910