Protein Alignment cocoon and tardbpb

DIOPT Version :9

• Sequence 1: NP_001261874.1
• Gene: cocoon / 39665
• FlyBaseID: FBgn0036496
• Length: 318
• Species: Drosophila melanogaster
• Sequence 2: NP_958884.1
• Gene: tardbpb / 325052
• ZFINID: ZDB-GENE-030131-3777
• Length: 412
• Species: Danio rerio
• Alignment Length: 323
• Identity: 145/323 - (44%)
• Similarity: 212/323 - (65%)
• Gaps: 39/323 - (12%)

  Fly     2 VFVHVSEKEGDEPIELPAEEDGTLLLSTLQAQFPESSGLQYRNVDTKAVRGVRSNEGRLYSPSEE 66
            :::.|:|:|.:||:|:|:|:|||:||||:.||||.:.||::|:..::.:||||..:|.|::|  |
Zfish     4 MYIRVAEEENEEPMEIPSEDDGTVLLSTVSAQFPGACGLRFRSPVSQCMRGVRLVDGILHAP--E 66

  Fly    67 TGWGEYHYFCVFPKK-----NKRQSEDNLENSTAKTKRTEAHLRCFDLIVLGLSYNTTEQDLREY 126
            .|||...|...:||:     |||:.::...:|..|.||.:.  :..|||||||.:.|:||||::|
Zfish    67 NGWGNLVYVVNYPKETVLPDNKRKMDEIDASSATKIKRGDQ--KTSDLIVLGLPWKTSEQDLKDY 129

  Fly   127 FETYGDVVKAEIKKDTRSGHSKGFGFVRFGSYDVQMHVLSKRHSIDGRWCEVKVPASRGMGNQEP 191
            |.|:|:|:..::|:|.::|:||||||||||.::.|..|:::||.||||||:.|:|.|: .|..||
Zfish   130 FGTFGEVIMVQVKRDVKTGNSKGFGFVRFGDWETQSKVMTQRHMIDGRWCDCKLPNSK-QGIDEP 193

  Fly   192 ---GKVFVGRCTEDIEADDLREYFSKFGEVIDVFIPKPFRAFSFVTFLDPYVPRVVCGEKHIIKG 253
               .||||||||||:.||:||::|.::|||.|||||||||||:||||.|..|...:|||..||||
Zfish   194 MRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQVAAALCGEDLIIKG 258

  Fly   254 VSVHVSTADKKNVQNKNQLFQTNNYNN------------------------LDN--NFKMQPA 290
            ||||:|.|:.|:...:..:.:...:.|                        |.|  ||.:.||
Zfish   259 VSVHISNAEPKHNNTRQMMERAGRFGNGFGGQGFAGSRSNMGGGGGGSSSSLGNFGNFNLNPA 321

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cocoon	NP_001261874.1	RRM1_TDP43	108..184	CDD:240767	42/75 (56%)
		RRM2_TDP43	193..262	CDD:240768	47/68 (69%)
tardbpb	NP_958884.1	RRM	<85..>177	CDD:223796	43/93 (46%)
		RRM1_TDP43	111..187	CDD:240767	42/75 (56%)
		RRM2_TDP43	197..267	CDD:240768	47/69 (68%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C170596520
Domainoid	1	1.000	84	1.000	Domainoid score	I8177
eggNOG	1	0.900	-	-		E1_28HBV
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	332	1.000	Inparanoid score	I2410
OMA	1	1.010	-	-		QHG48344
OrthoDB	1	1.010	-	-		D390211at33208
OrthoFinder	1	1.000	-	-		FOG0005498
OrthoInspector	1	1.000	-	-		mtm6337
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR48033
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X3916
SwiftOrtho	1	1.000	-	-
TreeFam	1	0.960	-	-
ZFIN	0	0.000	Not matched by this tool.
	14	13.870