DRSC/TRiP Functional Genomics Resources

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Protein Alignment cocoon and hnrnpa0a

DIOPT Version :10

Sequence 1:NP_648764.1 Gene:cocoon / 39665 FlyBaseID:FBgn0036496 Length:318 Species:Drosophila melanogaster
Sequence 2:NP_997810.2 Gene:hnrnpa0a / 323529 ZFINID:ZDB-GENE-030131-2249 Length:305 Species:Danio rerio


Alignment Length:195 Identity:63/195 - (32%)
Similarity:90/195 - (46%) Gaps:33/195 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 LENSTAKTKRTEAHLRCFDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFVR 154
            :||...|            |.|.||:..||:..||.:||.||.:....:.::.:...|:.||||.
Zfish     5 MENQLCK------------LFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVT 57

  Fly   155 FGSYDVQMHVLSKR-HSIDGRWCEVKVPASRGMGNQEPG---------KVFVGRCTEDIEADDLR 209
            :.|.|.....:|.| |.:||...|:|    |.:..::.|         |:|:|...:|||.|.||
Zfish    58 YSSPDEADSAMSARPHILDGNNVELK----RAVAREDAGKPEALAKVKKIFIGGLKDDIEEDHLR 118

  Fly   210 EYFSKFG--EVIDVFIPKPF---RAFSFVTFLD-PYVPRVVCGEKHIIKGVSVHVSTA-DKKNVQ 267
            :.||:||  |..:|...|..   |.|.||.|.| ....:.|..:.|||.|..|.|..| .|:.:|
Zfish   119 DCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAVVLKFHIINGHKVEVKKALTKQEMQ 183

  Fly   268  267
            Zfish   184  183

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cocoonNP_648764.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 26/73 (36%)
RRM2_TDP43 193..262 CDD:409761 30/75 (40%)
hnrnpa0aNP_997810.2 RRM1_hnRNPA0 8..86 CDD:409764 28/93 (30%)
RRM_SF 102..181 CDD:473069 31/78 (40%)
HnRNPA1 260..286 CDD:463312
Blue background indicates that the domain is not in the aligned region.

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