Protein Alignment cocoon and fne

DIOPT Version :9

• Sequence 1: NP_001261874.1
• Gene: cocoon / 39665
• FlyBaseID: FBgn0036496
• Length: 318
• Species: Drosophila melanogaster
• Sequence 2: NP_001096965.1
• Gene: fne / 32245
• FlyBaseID: FBgn0086675
• Length: 356
• Species: Drosophila melanogaster
• Alignment Length: 276
• Identity: 57/276 - (20%)
• Similarity: 90/276 - (32%)
• Gaps: 100/276 - (36%)

  Fly    48 KAVRGVRSNEGRLYSPSEET------------GWGEYHYFCVFPKKNKRQSED-----------N 89
            |.||...|  |.|..|:..|            |:|..:|.         ::||           .
  Fly    56 KLVRDKVS--GNLVLPASLTALNPALQQGQSLGYGFVNYV---------RAEDAEKAVNTLNGLR 109

  Fly    90 LENSTAK---TKRTEAHLRCFDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFG 151
            |:|...|   .:.:...::..:|.|.||..|.::.||...|.::|.::.:.|..|..||.|||.|
  Fly   110 LQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVG 174

  Fly   152 FVRFG------------------SYDVQMHVLSKRHSIDGRWCEVKVP-----------ASRGM- 186
            |:||.                  .|...:.|....:..:....::..|           |:|.:
  Fly   175 FIRFDQRNEAERAIQELNGKTPKGYAEPITVKFANNPSNSAKAQIAPPLTAYLTPQAAAATRRLA 239

  Fly   187 -------------------------GNQEPGK---VFVGRCTEDIEADDLREYFSKFGEVIDVFI 223
                                     ||...|.   :||.....:.|.:.|.:.|..||.|..|.:
  Fly   240 GALPSAGRIRYSPLAGDLLANSILPGNAMTGSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKV 304

  Fly   224 PKPF-----RAFSFVT 234
            .:..     :.|.|||
  Fly   305 IRDLQTSKCKGFGFVT 320

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cocoon	NP_001261874.1	RRM1_TDP43	108..184	CDD:240767	24/104 (23%)
		RRM2_TDP43	193..262	CDD:240768	13/50 (26%)
fne	NP_001096965.1	ELAV_HUD_SF	23..354	CDD:273741	57/276 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45439644
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.930