Protein Alignment cocoon and ssx

DIOPT Version :9

• Sequence 1: NP_001261874.1
• Gene: cocoon / 39665
• FlyBaseID: FBgn0036496
• Length: 318
• Species: Drosophila melanogaster
• Sequence 2: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Alignment Length: 345
• Identity: 75/345 - (21%)
• Similarity: 125/345 - (36%)
• Gaps: 88/345 - (25%)

  Fly     8 EKEGDEPIELPAEEDGTLLLSTLQAQFPESSG-LQYRNVDTKAVRGVRSNEGRLYSPSEETGWGE 71
            |..||.    ...:|||       ....:|:| :|..|.|     |....:|:.:|..||    :
  Fly    21 EGSGDN----VGRDDGT-------DDDDDSNGNMQQENGD-----GGNGGDGQEHSGDEE----Q 65

  Fly    72 YHYFCVFPKKNKRQSEDNLENSTA--------KTKRTEAHLRCFDLIVLGLSYNTTEQDLREYFE 128
            :|            |:||..|..:        :..||.|    .:||:..|..:.|:::|...|.
  Fly    66 HH------------SQDNEGNDNSAGQQQQMQQVDRTSA----TNLIINYLPQDMTDRELYNLFS 114

  Fly   129 TYGDVVKAEIKKDTRSGHSKGFGFVRFGSYDVQMHVLSKRHSIDGRWCEVKVPASRGMGNQ-EPG 192
            ..|.:...:|.:|.::|:|.|:|||.:.:.......:.|.:....|...:||..:|..|.. :..
  Fly   115 GCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGFYVRNKRLKVSYARPGGQSIKDT 179

  Fly   193 KVFVGRCTEDIEADDLREYFSKFGEVI------DVFIPKPFRAFSFVTF------------LDPY 239
            .::|...:.:|..|.|...||.:|.::      |....:| |..:||.:            |:..
  Fly   180 NLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRP-RGVAFVRYNKREEAQEAIKALNNT 243

  Fly   240 VPR-------VVCGEKHIIKGVSVHVSTADKKNVQNKNQLFQTNNYN-----NLDNNFKMQPANN 292
            ||.       |...|:|           ...|..|...|:...|...     ::.....|.|.::
  Fly   244 VPEGGSQPIWVRLAEEH-----------GKAKAAQFMAQIGGGNGGGGGGPPHMGPGGPMHPPHH 297

  Fly   293 FRMHPANNFSMHSFNPHGYQ 312
            ...|..||.......||.:|
  Fly   298 HNNHHHNNHHNPHMPPHHHQ 317

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cocoon	NP_001261874.1	RRM1_TDP43	108..184	CDD:240767	19/75 (25%)
		RRM2_TDP43	193..262	CDD:240768	18/93 (19%)
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	20/79 (25%)
		RRM_SF	179..257	CDD:302621	16/78 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45439623
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.930