DRSC/TRiP Functional Genomics Resources

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Protein Alignment cocoon and Rbm34

DIOPT Version :10

Sequence 1:NP_648764.1 Gene:cocoon / 39665 FlyBaseID:FBgn0036496 Length:318 Species:Drosophila melanogaster
Sequence 2:NP_001014037.1 Gene:Rbm34 / 307956 RGDID:1310161 Length:428 Species:Rattus norvegicus


Alignment Length:180 Identity:39/180 - (21%)
Similarity:72/180 - (40%) Gaps:49/180 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 QYRNVDTKAVRGVRSNEG----------RLYSPSEETGWGEYHYFCVFPKKNKRQSEDNLENSTA 95
            :|..|::...|.|...||          |.:.|.:::    .:.:.||  |.:|.:...|:.:.|
  Rat   205 EYGQVESVRFRSVMPAEGTLSKKLAAIKRKFHPDQKS----INAYVVF--KEERAAAKALQRNGA 263

  Fly    96 ------------------KTKRTEAHLRCFDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDT 142
                              :.||:        :.|..|.|...|..|.|:|...|.:|...|.::.
  Rat   264 QIAEGFRIRVDLASETASRDKRS--------VFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNP 320

  Fly   143 RSGHSKGFGFVRFGSYDVQMHVLSKRHSID--GRWCEVKVPASRGMGNQE 190
            .:|..:|||:|.|.:.|. :|:..|.::.:  ||    |:...|.:..::
  Rat   321 LTGVGRGFGYVLFENTDA-VHLALKLNNSELMGR----KLRVMRSVNKEK 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cocoonNP_648764.1 TDP43_N 3..78 CDD:465833 8/46 (17%)
RRM1_TDP43 108..181 CDD:409760 22/74 (30%)
RRM2_TDP43 193..262 CDD:409761
Rbm34NP_001014037.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..106
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 127..152
RRM1_RBM34 183..274 CDD:409828 14/74 (19%)
RRM2_RBM34 286..358 CDD:409829 22/84 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 361..428 0/5 (0%)
Blue background indicates that the domain is not in the aligned region.

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