Protein Alignment cocoon and Eif3g

DIOPT Version :10

• Sequence 1: NP_648764.1
• Gene: cocoon / 39665
• FlyBaseID: FBgn0036496
• Length: 318
• Species: Drosophila melanogaster
• Sequence 2: NP_001013113.1
• Gene: Eif3g / 298700
• RGDID: 1307191
• Length: 320
• Species: Rattus norvegicus
• Alignment Length: 134
• Identity: 34/134 - (25%)
• Similarity: 52/134 - (38%)
• Gaps: 26/134 - (19%)

  Fly    27 LSTLQAQFPESSGLQYRNV-----DTKAVRGVRSNEGRLYSPSEETGWGEYHYFCVFPKKNKRQS 86
            |..:|.:..|..||.....     :.:.|:..::..|:...||...|             ..|:.
  Rat   175 LGPMQKELAEQLGLSTGEKEKLPGELEPVQAAQNKTGKYVPPSLRDG-------------ASRRG 226

  Fly    87 EDNLENSTAKTKRTEAHLRCFDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFG 151
            |....|..|....|        :.|..||.:|.|.||:|.|..:|.:.:..:.||..:|.||||.
  Rat   227 ESMQPNRRADDNAT--------IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFA 283

  Fly   152 FVRF 155
            |:.|
  Rat   284 FISF 287

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cocoon	NP_648764.1	TDP43_N	3..78	CDD:465833	10/55 (18%)
		RRM1_TDP43	108..181	CDD:409760	19/48 (40%)
		RRM2_TDP43	193..262	CDD:409761
Eif3g	NP_001013113.1	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	1..60
		eIF3G	62..173	CDD:240597
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	205..233		6/40 (15%)
		RRM_eIF3G_like	240..315	CDD:409842	20/56 (36%)