| Sequence 1: | NP_648764.1 | Gene: | cocoon / 39665 | FlyBaseID: | FBgn0036496 | Length: | 318 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_001011724.1 | Gene: | HNRNPA1L2 / 144983 | HGNCID: | 27067 | Length: | 320 | Species: | Homo sapiens |
| Alignment Length: | 183 | Identity: | 64/183 - (34%) |
|---|---|---|---|
| Similarity: | 97/183 - (53%) | Gaps: | 17/183 - (9%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 92 NSTAKTKRTEAHLRCFDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFVRFG 156
Fly 157 SY-DVQMHVLSKRHSIDGRWCEVKVPASRGMGNQEPG------KVFVGRCTEDIEADDLREYFSK 214
Fly 215 FG--EVIDVFIPK---PFRAFSFVTFLD-PYVPRVVCGEKHIIKGVSVHVSTA 261 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| cocoon | NP_648764.1 | TDP43_N | 3..78 | CDD:465833 | |
| RRM1_TDP43 | 108..181 | CDD:409760 | 25/73 (34%) | ||
| RRM2_TDP43 | 193..262 | CDD:409761 | 29/75 (39%) | ||
| HNRNPA1L2 | NP_001011724.1 | Globular A domain | 4..94 | 32/93 (34%) | |
| RRM1_hnRNPA1 | 12..92 | CDD:410154 | 27/81 (33%) | ||
| Globular B domain | 95..185 | 32/86 (37%) | |||
| RRM_SF | 105..184 | CDD:473069 | 29/76 (38%) | ||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 181..216 | 64/183 (35%) | |||
| RNA-binding RGG-box | 218..240 | ||||
| HnRNPA1 | 255..292 | CDD:463312 | |||
| Nuclear targeting sequence. /evidence=ECO:0000250 | 268..305 | ||||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 271..320 | ||||
| Blue background indicates that the domain is not in the aligned region. | |||||