DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Toll-6 and Lrrn3

DIOPT Version :9

Sequence 1:NP_001246765.1 Gene:Toll-6 / 39663 FlyBaseID:FBgn0036494 Length:1514 Species:Drosophila melanogaster
Sequence 2:NP_110483.2 Gene:Lrrn3 / 81514 RGDID:71066 Length:707 Species:Rattus norvegicus


Alignment Length:695 Identity:142/695 - (20%)
Similarity:271/695 - (38%) Gaps:175/695 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   273 TSCSLDLEYLDVSHNDFVV------LPANGFGTLRRLRVLSVNNNGISMIADKALSGLKNLQILN 331
            |..|:.:|.|.|..||..:      |||:       .::|.:..|.|:.| :.:.....||..|:
  Rat    42 TPRSIYMEALTVDCNDLGLLNFPARLPAD-------TQILLLQTNNIARI-EHSTDFPVNLTGLD 98

  Fly   332 LSSNKIVALPTELFAEQAKIIQEVYLQNNSISVLNPQLFSNLDQLQALDLSMNQITSTWIDKNTF 396
            ||.|.:.:: |.:..::...:..|||:.|.::.|..:....|..||.|.::.|.:::  |....|
  Rat    99 LSQNNLSSV-TNINVQKMSQLLSVYLEENKLTELPEKCLYGLSNLQELYVNHNLLSA--ISPGAF 160

  Fly   397 VGLIRLVLLNLSHNKLTKLEPEIFSDLYTLQILNLRHNQLENIAADTFAPMNNLHTLLLSHNKLK 461
            |||..|:.|:|:.|:|..:..:.|..|..|:||.|..|.:..|....|.|:..|.:|:::.    
  Rat   161 VGLHNLLRLHLNSNRLQMINSKWFEALPNLEILMLGDNPILRIKDMNFQPLLKLRSLVIAG---- 221

  Fly   462 YLDAYALNGLYVLSLLSLDNNALIGVHPDAFRNCSALQDLNLNGNQLKTVP-LALRNMRHLRTVD 525
                        ::|..:..:||:|:        ..|:.::...|:|..|| :||:...:|:.:|
  Rat   222 ------------INLTEVPGDALVGL--------ENLESISFYDNRLNKVPQVALQKAVNLKFLD 266

  Fly   526 LGENMITVMEDSAFKGLGNLYGLRLIGNYLENITMHTFR--DLPNLQILNLARN-RIAVVEPGAF 587
            |.:|.|..:....|..:.:|..|. |.|..|.:::.:..  :||:|:.:....| |::.:.|.||
  Rat   267 LNKNPINRIRRGDFSNMLHLKELG-INNMPELVSIDSLAVDNLPDLRKIEATNNPRLSYIHPNAF 330

  Fly   588 EMTSSIQAVRLDGNELNDI-NGLFSNMPSLLWLNISDNRLESFDYGHVPSTLQWLDLHKN--RLS 649
            .....::::.|:.|.|:.: :|...::|:|..::|..|.:      .....::|::::|.  |..
  Rat   331 FRLPKLESLMLNSNALSALYHGTIESLPNLKEISIHSNPI------RCDCVIRWINMNKTNIRFM 389

  Fly   650 SLSNRFGLD-SELKLQTL-DVSFNQLQR-----IGPSSIPNSIEL---LFLNDNLITTVDPDT-- 702
            ...:.|.:| .|.:.|.: .|.|..:..     |.|.|.|:.:::   .:::.:...|.:|..  
  Rat   390 EPDSLFCVDPPEFQGQNVRQVHFRDMMEICLPLIAPESFPSILDVEADSYVSLHCRATAEPQPEI 454

  Fly   703 -------------------FMHK---------------------TNLTRVDLYANQITT------ 721
                               ::|.                     |||...||.:..|..      
  Rat   455 YWITPSGKRLLPNTLREKFYVHSEGTLDIRGITPKEGGLYTCIATNLVGADLKSIMIKVGGFVPQ 519

  Fly   722 ----------LDIKSLRILPVWEHRALPEFYIGGNPFTCDCNIDWLQ------------------ 758
                      .||::..:|..|:          .|......::.|..                  
  Rat   520 DNNGSLNIKIRDIRANSVLVSWK----------ANSKILKSSVKWTAFVKTEDSQAAQSARIPSD 574

  Fly   759 -KINHIT----SRQYPRIMDLETIYCKLLNNRERAYIPLIEAEPKHFLCTYKTH-CFAVC----- 812
             |:.::|    |.:|...:|:.|||.|............:|.:.|.   ..|:| .|..|     
  Rat   575 VKVYNLTHLKPSTEYKICIDIPTIYQKSRKQCVNVTTKSLEHDGKE---NGKSHTVFVACVGGLL 636

  Fly   813 ----HCCEFDACDCEMTCPTNCTCFHDQTWSTNIVECSGAAYSEM 853
                ..|.|.....|..|.:      :.:::.|.......|:||:
  Rat   637 GIIGVMCLFGCVSQEGNCES------EHSYTVNHCHKPTLAFSEL 675

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Toll-6NP_001246765.1 leucine-rich repeat 148..171 CDD:275380
LRR_8 171..236 CDD:290566
leucine-rich repeat 172..201 CDD:275380
leucine-rich repeat 202..278 CDD:275380 2/4 (50%)
leucine-rich repeat 229..249 CDD:275380
LRR_RI 278..468 CDD:238064 51/195 (26%)
leucine-rich repeat 279..302 CDD:275380 8/28 (29%)
LRR_8 301..386 CDD:290566 21/84 (25%)
leucine-rich repeat 303..326 CDD:275380 4/22 (18%)
leucine-rich repeat 327..350 CDD:275380 6/22 (27%)
LRR 350..729 CDD:227223 94/453 (21%)
leucine-rich repeat 352..375 CDD:275380 6/22 (27%)
leucine-rich repeat 376..401 CDD:275380 9/24 (38%)
LRR_RI <401..626 CDD:238064 55/229 (24%)
leucine-rich repeat 402..425 CDD:275380 7/22 (32%)
leucine-rich repeat 426..449 CDD:275380 8/22 (36%)
leucine-rich repeat 450..473 CDD:275380 2/22 (9%)
leucine-rich repeat 474..497 CDD:275380 4/22 (18%)
leucine-rich repeat 498..518 CDD:275380 7/20 (35%)
leucine-rich repeat 521..544 CDD:275380 6/22 (27%)
leucine-rich repeat 545..566 CDD:275380 5/22 (23%)
leucine-rich repeat 569..592 CDD:275380 6/23 (26%)
leucine-rich repeat 593..615 CDD:275380 4/22 (18%)
leucine-rich repeat 616..637 CDD:275380 3/20 (15%)
leucine-rich repeat 638..662 CDD:275380 6/26 (23%)
leucine-rich repeat 663..684 CDD:275380 7/26 (27%)
leucine-rich repeat 685..708 CDD:275380 3/67 (4%)
leucine-rich repeat 709..728 CDD:275380 6/34 (18%)
LRR_8 883..943 CDD:290566
leucine-rich repeat 885..908 CDD:275380
leucine-rich repeat 909..932 CDD:275380
LRR_8 932..990 CDD:290566
leucine-rich repeat 933..956 CDD:275380
TIR 1114..1247 CDD:214587
Lrrn3NP_110483.2 LRRNT 28..72 CDD:214470 10/36 (28%)
LRR 1 70..91 4/28 (14%)
LRR <72..355 CDD:227223 77/311 (25%)
leucine-rich repeat 72..93 CDD:275380 4/21 (19%)
LRR 2 93..114 7/21 (33%)
leucine-rich repeat 94..117 CDD:275380 6/23 (26%)
LRR 3 117..138 5/20 (25%)
leucine-rich repeat 118..141 CDD:275380 6/22 (27%)
LRR 4 141..162 6/22 (27%)
leucine-rich repeat 142..165 CDD:275380 9/24 (38%)
LRR 5 165..186 6/20 (30%)
leucine-rich repeat 166..189 CDD:275380 7/22 (32%)
LRR 6 189..210 7/20 (35%)
leucine-rich repeat 190..213 CDD:275380 8/22 (36%)
LRR 7 213..234 5/36 (14%)
leucine-rich repeat 214..237 CDD:275380 6/46 (13%)
LRR 8 237..258 7/20 (35%)
leucine-rich repeat 238..261 CDD:275380 7/22 (32%)
LRR 9 261..282 6/20 (30%)
leucine-rich repeat 262..285 CDD:275380 6/22 (27%)
LRR 10 285..304 5/19 (26%)
leucine-rich repeat 286..310 CDD:275380 6/24 (25%)
LRR 11 310..332 6/21 (29%)
leucine-rich repeat 311..333 CDD:275380 6/21 (29%)
LRR 12 335..358 4/22 (18%)
leucine-rich repeat 336..359 CDD:275378 4/22 (18%)
PCC 341..>405 CDD:188093 14/69 (20%)
leucine-rich repeat 360..372 CDD:275378 3/17 (18%)
Ig 440..513 CDD:416386 9/72 (13%)
Ig strand B 440..447 CDD:409353 0/6 (0%)
Ig strand C 453..458 CDD:409353 0/4 (0%)
Ig strand C' 461..464 CDD:409353 0/2 (0%)
Ig strand D 470..474 CDD:409353 0/3 (0%)
Ig strand E 479..483 CDD:409353 0/3 (0%)
Ig strand F 493..500 CDD:409353 0/6 (0%)
Ig strand G 503..513 CDD:409353 3/9 (33%)
fn3 526..593 CDD:394996 10/76 (13%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.