DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Best4 and best2

DIOPT Version :9

Sequence 1:NP_001097609.1 Gene:Best4 / 39660 FlyBaseID:FBgn0036491 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_988974.1 Gene:best2 / 394571 XenbaseID:XB-GENE-991642 Length:510 Species:Xenopus tropicalis


Alignment Length:377 Identity:176/377 - (46%)
Similarity:251/377 - (66%) Gaps:17/377 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTVTYTSRVSTSSVLSNFLGLLVRWRGSIYKLIWLDLIVFFGLYCLLAITYRLLVNEEGKRFFEA 65
            ||||||:||:.:. ...|..||:.||||||||::.:.:.||.:|..|:|.||..:|||.|.:|:.
 Frog     1 MTVTYTARVANAR-FGGFYKLLLLWRGSIYKLLYKEFLAFFLMYLALSIIYRFFLNEEQKLYFDK 64

  Fly    66 IMSYCEKNGSLIPLSFVLGFFVRIVMNRWWDQYTTIPWPDGIAILISTSIHGSDDRARVMRRTIL 130
            :..||....:|||:||||||:|.:|:||||:||.::|:||.:...||.::||||:..|:.|||::
 Frog    65 VAIYCNNYANLIPVSFVLGFYVNLVVNRWWNQYLSLPFPDRVMCAISGTVHGSDETGRLYRRTLM 129

  Fly   131 RYVCLCQVIVFTMISPRVKRRFPTYTQIIEAGFLLENEKKIIEAMDQAFPSYPKHWMPIVWAASI 195
            ||..|..:::...:|....:||||...::||||:...|:|..|.:..   ||.|:|:|.||..::
 Frog   130 RYCSLSGLLILRSVSTAAFKRFPTIDHVVEAGFMTRLERKKFENLQS---SYNKYWVPCVWFCNL 191

  Fly   196 VMRARRENKIRDDYAVKTIIDELNQLRGNCGFLLYYDWISVPLVYTQVVTVATYSFFLFSVLGQQ 260
            ..:||.|.:||||::.|.:::|||..|||||.|.:|||||||||||||||:|.|||||..::|:|
 Frog   192 ASQARSEGRIRDDHSFKMLMEELNTFRGNCGMLFHYDWISVPLVYTQVVTIAVYSFFLTCLIGRQ 256

  Fly   261 WNESHSDEDGTRIRRWFPILTVLQFFFYMGWLKVAETLINPFGEDDDDFELNWIIDRNLTVSYCI 325
            :.:......|..:..:.|:.|:||||||.|||||||.|||||||||||||:|::||||..||...
 Frog   257 FLDPARGYPGHELDLYVPVFTLLQFFFYAGWLKVAEQLINPFGEDDDDFEINFLIDRNFQVSMLA 321

  Fly   326 VDEMHQEHPELVKDQYWEEVFPNEIPYAQPKMRQNPP-AASTAYMESQSKLQ 376
            ||||:.:.|.:.||:||.        ::.|:    || .|:|.:.:.....|
 Frog   322 VDEMYSDVPPMEKDRYWN--------HSDPR----PPYTAATLFQKHMPSFQ 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Best4NP_001097609.1 Bestrophin 8..319 CDD:279411 152/310 (49%)
best2NP_988974.1 Bestrophin 8..316 CDD:395843 153/311 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 355 1.000 Domainoid score I987
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 377 1.000 Inparanoid score I2034
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145964at33208
OrthoFinder 1 1.000 - - FOG0001515
OrthoInspector 1 1.000 - - mtm9346
Panther 1 1.100 - - O PTHR10736
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X320
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.160

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