DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Best4 and best-13

DIOPT Version :9

Sequence 1:NP_001097609.1 Gene:Best4 / 39660 FlyBaseID:FBgn0036491 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_501784.1 Gene:best-13 / 185198 WormBaseID:WBGene00009323 Length:413 Species:Caenorhabditis elegans


Alignment Length:392 Identity:135/392 - (34%)
Similarity:219/392 - (55%) Gaps:45/392 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTVTYTSRVSTSSVLSNFLGLLVRWRGSIYKLIWLDLIVFFGLYCLLAITY----RLLVNEEG-- 59
            ||::|:         .|.:.:|:||:|||::..|.:|:::..||..:.:.|    .|:.::|.  
 Worm     1 MTISYS---------GNVIRILLRWKGSIWRTAWKELLIYLILYYSVRVFYLKGIDLIDDDEDDR 56

  Fly    60 ---KRFFEAIMSYCEKNGSLIPLSFVLGFFVRIVMNRWWDQYTTIPWPDGIAILISTSIHGSDDR 121
               :|.||.....|:....||||:|:|||:|..|:.|||.|:.|:.||:.|..::.|.:|..|::
 Worm    57 LKMRRMFETFCRQCDSYTRLIPLTFLLGFYVSNVVARWWRQFETLYWPEDILSVLCTVLHQHDEK 121

  Fly   122 ARVMRRTILRYVCLCQVIVFTMISPRVKRRFPTYTQIIEAGFLLENEKKIIEAMDQAFPSYPKHW 186
            ::..|.||.||:.|...:.:..||.:::.|||:...:||:|.|.|.|.:|:|||.....|  ..|
 Worm   122 SKRRRHTIARYLNLANALAWRDISSKIRLRFPSVHSLIESGLLTEKEYQILEAMHAENES--SRW 184

  Fly   187 M-PIVWAASIVMRARRENKIRDDYAVKTIIDELNQLRGNCGFLLYYDWISVPLVYTQVVTVATYS 250
            : |:.|...|:.:...|:|.... .....:.||...|.:...|..|||:.||||||||..:||||
 Worm   185 ITPLHWIQLIMRQVEEEHKPTAS-LFNQFVGELRIFRQSLRKLYSYDWVCVPLVYTQVAALATYS 248

  Fly   251 FFLFSVLGQQWNESHSD-EDGTRIRRWFPILTVLQFFFYMGWLKVAETLINPFGEDDDDFELNWI 314
            ||.|::.|:|  ....| |.|..:....|:.|::||.|::||.||.:.|:.|||.||||.|||:|
 Worm   249 FFFFTLFGRQ--PLFPDIETGKELDLVVPVFTIVQFLFFVGWFKVGQDLMRPFGLDDDDIELNYI 311

  Fly   315 IDRNLTVSYCIVDEMHQEHP----ELVKDQYWEEVFP-------------NEIPYAQ--PKMRQN 360
            :|||:.:|:.||::: ||.|    |...|:.|.|:.|             .::|:::  .::.::
 Worm   312 LDRNVRISFAIVNQL-QESPIPDFESNDDKLWHEMHPPTKDGETSPIPRIPQLPHSKYSKQLSEH 375

  Fly   361 PP 362
            ||
 Worm   376 PP 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Best4NP_001097609.1 Bestrophin 8..319 CDD:279411 117/321 (36%)
best-13NP_501784.1 Bestrophin 7..316 CDD:279411 117/313 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3547
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG28981
OrthoDB 1 1.010 - - D145964at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.830

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