DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Best4 and best-7

DIOPT Version :9

Sequence 1:NP_001097609.1 Gene:Best4 / 39660 FlyBaseID:FBgn0036491 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_502108.2 Gene:best-7 / 178030 WormBaseID:WBGene00007808 Length:540 Species:Caenorhabditis elegans


Alignment Length:556 Identity:167/556 - (30%)
Similarity:274/556 - (49%) Gaps:89/556 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTVTYTSRVSTSSVLSNFLGLLVRWRGSIYKLIWLDLIVFFGLYCLLAITYRLLVNEEGKRFFEA 65
            ||..|...::||. ....|.|:.:|:||::|.|:|||||:...|..:::.||..::...:..||.
 Worm     1 MTYNYHYDLATSQ-RKVILKLIFKWKGSLWKAIYLDLIVWCFCYAFISVIYRYALDRSQQDTFER 64

  Fly    66 IMSYCEKNGSLIPLSFVLGFFVRIVMNRWWDQYTTIPWPDGIAILISTSIHGSDDRARVMRRTIL 130
            .|.:|.:....||::|:|||||..|:|||..|:..:...|.||:..|..:.|:|:|.|::||:|:
 Worm    65 FMQFCNRRLDYIPINFMLGFFVTTVINRWMTQFANLGMIDNIALFTSMYLSGNDERGRILRRSIV 129

  Fly   131 RYVCLCQVIVFTMISPRVKRRFPTYTQIIEAGFLLENEKKIIEAMDQAFPSYPKHWMPIVWAASI 195
            |...:.|.:||..|...|::||||...::.||.:..:|.|....::.   .|.|:|:...|..::
 Worm   130 RMCVMSQTMVFRDIHIGVRKRFPTLETMVAAGIMTSSELKKYNEVES---RYAKYWLGFNWTFNL 191

  Fly   196 VMRARRENKIRDDYAVKTIIDELNQLRGNCGFLLYYDWISVPLVYTQVVTVATYSFFLFSVLGQQ 260
            :..||||.:|...|....|.:|:...|.....:..|||:.:||:|.|:|.:|.:.::|..::.:|
 Worm   192 LNEARREGRIESAYTQNAIAEEIRTFRSGLSLIWTYDWVPIPLMYPQLVFMAIHCYYLVCLVSRQ 256

  Fly   261 WNESHSDEDGTRIRRWFPILTVLQFFFYMGWLKVAETLINPFGEDDDDFELNWIIDRNLTVSYCI 325
            :..:....:.|.|....|.:|:::|.|||||||||..|:||||||:|||:.|::|||||||:..|
 Worm   257 FVINSDAVNTTEIDLGVPFMTIIEFIFYMGWLKVAMDLLNPFGEDEDDFDCNFLIDRNLTVAMGI 321

  Fly   326 VDEMHQEHPELVKDQYWEEVFPNEIPYAQPKMRQNPPAASTAYMESQSKLQKRHESAMSTLSTRS 390
            ||:.|.:.|.|.||.:|.:                  ..|..|               |:.:.:.
 Worm   322 VDDSHDDGPILEKDMFWND------------------TVSPLY---------------SSAAAQR 353

  Fly   391 RNNFRQNFLGRPSATGSYSDSIQMEDGPSRVTFSENQFDLPH------DE---ANSSHKPSQSTI 446
            ..||   :.|  |||.:   ..|:.|...::|.      :||      |:   ..::..|.||.:
 Worm   354 NVNF---YFG--SATNA---DAQIPDDVRQITM------IPHPLNEKLDQMYGKRTNRPPVQSVV 404

  Fly   447 DFNDLIEQR---RRERRERIRHRFLD-----MQSTHLRHDTSGAPYTITVLRPPSD-ETLSESQ- 501
            :...  :||   ...|::.:..:|.:     .|..|.:..|. .|.:.|..|..:| ||:|..: 
 Worm   405 ELKR--DQRFSTGNNRKQTLEAKFSNKLGAMFQKRHSKSLTF-TPESSTKARASTDIETVSTFEN 466

  Fly   502 -------------EAGDRAQQDPSGSKEP---PPNK 521
                         |..:.:|..|..::||   ||.|
 Worm   467 TQKPCYSNPDCIVEVDEESQDIPKVTEEPKQEPPRK 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Best4NP_001097609.1 Bestrophin 8..319 CDD:279411 111/310 (36%)
best-7NP_502108.2 Bestrophin 8..315 CDD:279411 111/310 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 282 1.000 Domainoid score I871
eggNOG 1 0.900 - - E1_KOG3547
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 299 1.000 Inparanoid score I1638
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145964at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm4777
orthoMCL 1 0.900 - - OOG6_101870
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2974
SonicParanoid 1 1.000 - - X320
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
98.800

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