DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Best4 and best-24

DIOPT Version :9

Sequence 1:NP_001097609.1 Gene:Best4 / 39660 FlyBaseID:FBgn0036491 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_498717.1 Gene:best-24 / 176110 WormBaseID:WBGene00022797 Length:632 Species:Caenorhabditis elegans


Alignment Length:601 Identity:185/601 - (30%)
Similarity:304/601 - (50%) Gaps:80/601 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTVTYTSRVSTSSVLSNFLGLLVRWRGSIYKLIWLDLIVFFGLYCLLAITYRLLVNEEGKRFFEA 65
            ||:.|...||||...:.| .||::|||||:|.:.|:|.|:..||.:|::.||..:|...:|.||.
 Worm     1 MTINYNLAVSTSKPWTLF-KLLLKWRGSIWKAVILELAVWLVLYGILSVIYRTALNPGQQRTFER 64

  Fly    66 IMSYCEKNGSLIPLSFVLGFFVRIVMNRWWDQYTTIPWPDGIAILISTSIHGSDDRARVMRRTIL 130
            |:.||:...|.|||:|:|||||..|:|||...|..|.:.|.|.::.:..:.|..::||:.||.|:
 Worm    65 IVQYCDSRLSYIPLNFMLGFFVTAVVNRWTYLYQIIGFIDNIGLMAAEYVRGRTEQARMYRRNIV 129

  Fly   131 RYVCLCQVIVFTMISPRVKRRFPTYTQIIEAGFLLENEKKIIEAMDQAFPSYPKHWMPIVWAASI 195
            ||..|.||:||..||.|.:|||||...::.|||::.:||   :..|:....|.|:|:|..||.|:
 Worm   130 RYCELAQVLVFRDISMRTRRRFPTLDTVVAAGFMMPHEK---DRFDEIQYKYSKYWVPFQWAFSL 191

  Fly   196 VMRARRENKIRDDYAVKTIIDELNQLRGNCGFLLYYDWISVPLVYTQVVTVATYSFFLFSVLGQQ 260
            ...||::..|..||....:.||:.:.|....::..|||:.:|::|.|:|.:|.:::||..:|.:|
 Worm   192 TYEARKKGLIESDYYQVVVQDEIKKFRTGLAWICNYDWVPIPIMYPQLVCLAVHTYFLVCLLARQ 256

  Fly   261 WNESHSDEDGTRIRRWFPILTVLQFFFYMGWLKVAETLINPFGEDDDDFELNWIIDRNLTVSYCI 325
            :..|...::.|.|..:|||::.|||.|||||:||||.::|||||||||||.|.:||||:|:...:
 Worm   257 YVVSEHADNKTEIDLYFPIMSTLQFIFYMGWMKVAEAMLNPFGEDDDDFECNALIDRNITMVLMM 321

  Fly   326 VDEMHQEHPELVKDQYWEE-----------VFPN----------EIPYAQPKMRQNPPAASTAYM 369
            ||:.:...|:|.:|.:|:|           ..||          ::|....:::..|.....:.:
 Worm   322 VDQGYDRAPDLKRDDFWDEEVEPLYSEETAKIPNNPLKGSVSDVKLPEYVHEIKMVPHCDDASPL 386

  Fly   370 ESQSKLQKRHESAMSTLSTRSRNNFR----QNFLGRPSATGSYSDSIQ-------MEDGPSRVTF 423
            ....::::|..|.:....:..:::..    :..||......|:.:.|:       :.|...|.||
 Worm   387 VPGDEMRRRRVSVVPVKPSDQQHHHHGHRTRTSLGNIEMFRSFKNKIERSFSKPHLHDDLGRKTF 451

  Fly   424 SENQFDLPHDE------ANSSHKPSQSTIDF------NDLIEQR-------------RRERRERI 463
            |....:....|      |:.||..:.|..:.      .||..:|             :|......
 Worm   452 SHGMLENMEFEGSNTNIADGSHANNNSFTNSAFVNSGEDLSNKRIDTSSSQPQLATGKRGSEHPF 516

  Fly   464 RHRFLD----------MQSTHLRHDTSGAPYTITVLRPPSDET--------LSESQEAGDRAQQD 510
            :|..||          .|.| :|..:|.....||::...::.|        ..|.::..:..:::
 Worm   517 QHHVLDDVLEDDESDENQLT-IRKKSSVLQPAITLVERFNEATGQLETEVKRDEKKKKEEELREE 580

  Fly   511 PSGSKEPPPNKTEKQD 526
            ....||...||.:|::
 Worm   581 GDNGKEEKDNKEDKKE 596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Best4NP_001097609.1 Bestrophin 8..319 CDD:279411 133/310 (43%)
best-24NP_498717.1 Bestrophin 9..315 CDD:279411 133/309 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159960
Domainoid 1 1.000 282 1.000 Domainoid score I871
eggNOG 1 0.900 - - E1_KOG3547
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 299 1.000 Inparanoid score I1638
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145964at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm4777
orthoMCL 1 0.900 - - OOG6_101870
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2974
SonicParanoid 1 1.000 - - X320
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1110.730

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