DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Best4 and best4

DIOPT Version :9

Sequence 1:NP_001097609.1 Gene:Best4 / 39660 FlyBaseID:FBgn0036491 Length:526 Species:Drosophila melanogaster
Sequence 2:NP_001116914.1 Gene:best4 / 100144681 XenbaseID:XB-GENE-1194400 Length:514 Species:Xenopus tropicalis


Alignment Length:531 Identity:215/531 - (40%)
Similarity:306/531 - (57%) Gaps:47/531 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTVTYTSRVSTSSVLSNFLGLLVRWRGSIYKLIWLDLIVFFGLYCLLAITYRLLVNEEGKRFFEA 65
            |||:||.:|:.:| ...|..||.||:||||||::.:.|||..||.:|::|||.|:||:.|..|..
 Frog     1 MTVSYTLKVANAS-FGCFFKLLFRWKGSIYKLLYKEFIVFCCLYAMLSVTYRCLLNEKQKSEFAQ 64

  Fly    66 IMSYCEKNGSLIPLSFVLGFFVRIVMNRWWDQYTTIPWPDGIAILISTSIHGSDDRARVMRRTIL 130
            :..||.:...|||:||||||:|.:::||||.|||.||.||.:..::|:::||.|:|.|::|||::
 Frog    65 LARYCNQYTDLIPVSFVLGFYVTLIVNRWWAQYTNIPLPDQLMCVVSSNVHGGDERGRLLRRTMM 129

  Fly   131 RYVCLCQVIVFTMISPRVKRRFPTYTQIIEAGFLLENEKKIIEAMDQAFPSYPKHWMPIVWAASI 195
            ||..|..|::...:|.||.:||||...|:||||:...|.|..|.:   |..|.|:|:|.||..::
 Frog   130 RYANLSSVLILRSVSTRVLKRFPTMEHIVEAGFMTREELKKYECL---FSDYNKYWIPCVWFTNL 191

  Fly   196 VMRARRENKIRDDYAVKTIIDELNQLRGNCGFLLYYDWISVPLVYTQVVTVATYSFFLFSVLGQQ 260
            ..:|||:.::|||.|:|.::||||:.|..|..|.:|||||||||||||||:|.||||...::|:|
 Frog   192 AAQARRDGRVRDDVALKLLMDELNKYRAKCSMLFHYDWISVPLVYTQVVTIAVYSFFGVCIIGRQ 256

  Fly   261 WNESHSDEDGTRIRRWFPILTVLQFFFYMGWLKVAETLINPFGEDDDDFELNWIIDRNLTVSYCI 325
            :.|...:|:...|..:.||.|:||||||.||||||:.:||||||||||||.|.:|||||.||...
 Frog   257 FLEPELEEEKPNIDLYVPIFTLLQFFFYSGWLKVAQQIINPFGEDDDDFETNRLIDRNLQVSLLS 321

  Fly   326 VDEMHQEHPELVKDQYWEE--VFPNEIPY--AQPKMRQNPPAASTAY-MESQSKLQKRHESAMST 385
            ||:|:|..|.|.||:||::  ..|   ||  |.......|....:|: |......::..:.|::.
 Frog   322 VDDMYQNLPPLEKDKYWDDQTAAP---PYTLATAAETLKPSFMGSAFDMRFLGDAEQSQQVAVTP 383

  Fly   386 LSTRSRNNF--------------RQNFLGRPSATGSYSDSIQMEDGPSRVTFSENQFDLPHDEAN 436
            ...|:|...              .:||:|| ...|.:....:.:..||....|.|. ||.||   
 Frog   384 NMPRARTPMLSRFLSSAPSPAVSLKNFMGR-GTRGHHLVRFRGDGYPSPNPNSRNS-DLEHD--- 443

  Fly   437 SSHKPSQSTIDFNDLIEQRRRERRE---------RIRHRFLDMQSTHLRHDTSGAPYTITVLRPP 492
                 |...||..:..|..:..|..         |:..| |:......:.:....|..:.::..|
 Frog   444 -----SVGRIDEEETTEDEKESRASEPPTPKVTLRVPRR-LEASEQQKKREQPKPPPLVIIVDEP 502

  Fly   493 SDETL-SESQE 502
            |||:| ||..|
 Frog   503 SDESLNSEPAE 513

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Best4NP_001097609.1 Bestrophin 8..319 CDD:279411 156/310 (50%)
best4NP_001116914.1 Bestrophin 8..315 CDD:279411 156/310 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 355 1.000 Domainoid score I987
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H129743
Inparanoid 1 1.050 377 1.000 Inparanoid score I2034
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145964at33208
OrthoFinder 1 1.000 - - FOG0001515
OrthoInspector 1 1.000 - - mtm9346
Panther 1 1.100 - - O PTHR10736
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2974
SonicParanoid 1 1.000 - - X320
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.100

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