DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6878 and Romo1

DIOPT Version :9

Sequence 1:NP_648757.1 Gene:CG6878 / 39656 FlyBaseID:FBgn0036488 Length:79 Species:Drosophila melanogaster
Sequence 2:NP_001157688.1 Gene:Romo1 / 67067 MGIID:1914317 Length:79 Species:Mus musculus


Alignment Length:79 Identity:49/79 - (62%)
Similarity:62/79 - (78%) Gaps:0/79 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPLPTSSFSQQGPTCFDKMKTGFIIGFCVGMASGAVFGGFSALRYGLRGRELINNVGKTMVQGGG 65
            ||:....:.|..|:|||::|.||::|..||||:||:||.||.||.|:|||||:..:||||:|.||
Mouse     1 MPVAVGPYGQSQPSCFDRVKMGFVMGCAVGMAAGALFGTFSCLRIGMRGRELMGGIGKTMMQSGG 65

  Fly    66 TFGTFMAIGTGIRC 79
            |||||||||.||||
Mouse    66 TFGTFMAIGMGIRC 79

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6878NP_648757.1 Romo1 14..79 CDD:402038 43/64 (67%)
Romo1NP_001157688.1 Romo1 14..79 CDD:402038 43/64 (67%)
Sufficient for antibacterial activity. /evidence=ECO:0000250 42..60 10/17 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 102 1.000 Domainoid score I6896
eggNOG 1 0.900 - - E1_KOG4096
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H7096
Inparanoid 1 1.050 111 1.000 Inparanoid score I4855
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48599
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004057
OrthoInspector 1 1.000 - - oto94976
orthoMCL 1 0.900 - - OOG6_105143
Panther 1 1.100 - - LDO PTHR28525
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R715
SonicParanoid 1 1.000 - - X3897
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.860

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