Sequence 1: | NP_648755.1 | Gene: | Msh6 / 39654 | FlyBaseID: | FBgn0036486 | Length: | 1190 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_014551.1 | Gene: | MSH2 / 854063 | SGDID: | S000005450 | Length: | 964 | Species: | Saccharomyces cerevisiae |
Alignment Length: | 952 | Identity: | 240/952 - (25%) |
---|---|---|---|
Similarity: | 386/952 - (40%) | Gaps: | 211/952 - (22%) |
- Green bases have known domain annotations that are detailed below.
Fly 319 ISFDKMSTI----LVDRGFKVARVEQTETPDMMTERCKRIKATKFDKVVAREICQITNRG--TQV 377
Fly 378 FGSQCKIGPNHQPNYMLAIVEKDEGTCSRYGVCFIDTS---IGDFHLGEFEDDKNC-SRLLTLVS 438
Fly 439 HHMPVLFLNEKSALSQRTQQIVRTVLGGILKEPVPGNGKHACSAEKTLKLLAERYYAGPGSDDNW 503
Fly 504 PLVLRTMQSDMDHLGLTPNDNYKLALKALGQCIFFIHKCKLEPKVLPMARYQLYVPPDQLADAKP 568
Fly 569 AVASTLRRSHMVLDATTLSNLRII------------------------GEEHSLLSTLDHCCTKF 609
Fly 610 GKRLLHHWLCAPSCDVSVIKERQDAIGELIRMPTELQEVRALLA----PM-PDFERNLAQIHLFG 669
Fly 670 NKQIKQMDHPDSRAILFEE--KLYNKQK-----LQGFMAVLKGFNDLTKLPTMFHQCKTTLLKRI 727
Fly 728 TQLPESGGSFPDLSKELQYFATAFDHDAAAKTGVIAPQAGMDAE-------------------YD 773
Fly 774 AAMDSIGEVEKRLKTYLVEQERHFGC-RITYFGSDKKRYQLDVPESHASKANKSYTLEGQTKGKK 837
Fly 838 PSRRYTTAETRALLK--DMQHAEDTRNMVLKDLA-RRLFEKFSNHYDQWKQCIDCVANLDVLGSL 899
Fly 900 AEYAGQQMVICV-PELVSDADQPFIQLEEGYHPCANAS---TYIPNGLELGTASEAPLSLLTGPN 960
Fly 961 MGGKSTLMREVGLLVIMAQIGAHIPAASCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLIL 1025
Fly 1026 KHATCHSLVLLDELGRGTATYDGTAIAASVVNFLAN-LKCRTLFSTHYHNLIDFFHNDKRITLGH 1089
Fly 1090 MACMVE---NEDNADPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRAYELSKKVEAIA 1151
Fly 1152 LQRKITAKIVAATAGNEDTKKEKIN---------ALKDLLKQ 1184 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Msh6 | NP_648755.1 | MttA_Hcf106 | <44..156 | CDD:294511 | |
MutS | 261..1186 | CDD:223327 | 240/952 (25%) | ||
MutS_I | 263..375 | CDD:279898 | 11/61 (18%) | ||
MutS_II | 391..508 | CDD:282973 | 24/120 (20%) | ||
MutS_III | 584..>667 | CDD:282977 | 28/111 (25%) | ||
MutS_IV | 767..859 | CDD:282975 | 25/113 (22%) | ||
ABC_MSH6_euk | 924..1140 | CDD:213253 | 83/222 (37%) | ||
MSH2 | NP_014551.1 | MutS | 11..929 | CDD:223327 | 240/952 (25%) |
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0249 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |