Sequence 1: | NP_648755.1 | Gene: | Msh6 / 39654 | FlyBaseID: | FBgn0036486 | Length: | 1190 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_005157849.1 | Gene: | msh5 / 570030 | ZFINID: | ZDB-GENE-131127-632 | Length: | 814 | Species: | Danio rerio |
Alignment Length: | 818 | Identity: | 199/818 - (24%) |
---|---|---|---|
Similarity: | 334/818 - (40%) | Gaps: | 213/818 - (26%) |
- Green bases have known domain annotations that are detailed below.
Fly 389 QPNYMLAIVEKDEGTCSRYG---VCFIDTSIGDFHLGEFEDDKNCSRLLTLVSHHMPVL------ 444
Fly 445 ---FLNEKSALSQRTQQIVRTVLGGILKEPVPGNGKHACSAEKTLKLLAERYYAGPGSDDN---W 503
Fly 504 PLVLRTMQSDMDHLGLTPNDNYKLALKALGQCIFFIHKCKLEPKVLPMARYQLYVPPDQLADAKP 568
Fly 569 AVASTLRRSHMVLDATTLSNLRIIGEEHSLLSTLDHCCTKFGKRLLHHWLCAPSCDVSVIKERQD 633
Fly 634 AIGELIRMPTELQEVRALLAPMPDFERNLAQIHLFGN--KQIKQMDHPDSRAILFEEKLYNKQKL 696
Fly 697 QGFMAVLKGFNDLTKLPTMFHQCKTTLLKRITQLPESGGSFPDLSK----ELQYFAT------AF 751
Fly 752 DHDAAAKTGVIAPQAGMDAEYDAAMDSIGEVEKR----LKTYLVE---------QERHFGCRITY 803
Fly 804 ---FGSDKKRYQLDVPESHASKANKSYTLEG-----QTKGKKPSRRYTTAETRALLKDMQHAE-- 858
Fly 859 DTRNMVLKDLARRLFEKFSNHYDQWKQCIDCVANLDVLGSLAEYAGQQMVICVPELVSDADQPFI 923
Fly 924 QLEEGYHP----CAN---ASTYIPNGLELGTASEAPLSLLTGPNMGGKSTLMREVGLLVIMAQIG 981
Fly 982 AHIPAASCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVLLDELGRGTATY 1046
Fly 1047 DGTAIAASVVN--FLANLKC-RTLFSTHYHNLID--FFHNDKRITLGHMACMVENEDNADPTQET 1106
Fly 1107 VTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRAYELS 1144 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Msh6 | NP_648755.1 | MttA_Hcf106 | <44..156 | CDD:294511 | |
MutS | 261..1186 | CDD:223327 | 199/818 (24%) | ||
MutS_I | 263..375 | CDD:279898 | |||
MutS_II | 391..508 | CDD:282973 | 29/131 (22%) | ||
MutS_III | 584..>667 | CDD:282977 | 22/82 (27%) | ||
MutS_IV | 767..859 | CDD:282975 | 21/114 (18%) | ||
ABC_MSH6_euk | 924..1140 | CDD:213253 | 77/227 (34%) | ||
msh5 | XP_005157849.1 | MutS_III | 206..360 | CDD:282977 | 50/234 (21%) |
MUTSd | 234..549 | CDD:214710 | 80/373 (21%) | ||
P-loop_NTPase | 538..743 | CDD:304359 | 75/218 (34%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0249 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D138168at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.820 |