Sequence 1: | NP_648755.1 | Gene: | Msh6 / 39654 | FlyBaseID: | FBgn0036486 | Length: | 1190 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_114076.1 | Gene: | Msh4 / 55993 | MGIID: | 1860077 | Length: | 958 | Species: | Mus musculus |
Alignment Length: | 887 | Identity: | 201/887 - (22%) |
---|---|---|---|
Similarity: | 355/887 - (40%) | Gaps: | 209/887 - (23%) |
- Green bases have known domain annotations that are detailed below.
Fly 388 HQPNYMLAIVEKDEGTCSRYGVCFIDTSIGDFHLGEFEDDKNCSRLLTLVSHHMPVLFLNEKSAL 452
Fly 453 SQRTQQIVRTVLGGILKEPVPGNGKHACSAEKTLKLLAERYYAGPGSDDNWPLVLRTMQSD---- 513
Fly 514 --MDHLGLTPNDNYKL----------ALKALGQCIFFIHKCKLEPKVLPMARYQLYVPPDQLADA 566
Fly 567 KPAVASTLRRSHMVLDATTLSNLRII------GEEHSLLSTLDHCCTKFGKRLLHHWLCAPSCDV 625
Fly 626 SVIKERQDAIGELIRMPTELQEVRALLAPMPDFERNLAQIHLFGNKQIKQMDHPDSRAILFEEKL 690
Fly 691 YNKQKLQGFMAVLKGFNDLTK-LPTMFHQCKTTLLKRITQLPESGGSFPD--LSKELQYFATAFD 752
Fly 753 HDAAAKTGVI--------APQAGMDAEYDAAM--------DSIGEVEKRLKTYLVEQERHFGCRI 801
Fly 802 TYF----------GSDKKRYQLDVPESHASKANKSYTLEGQTKGKKPSRRYTTAETRALLKDMQH 856
Fly 857 AEDTRN-------MVLKDLARRLFEKFSNHYDQWKQCIDCVANLDVLGSLAEYAGQQMVICVPEL 914
Fly 915 VSDADQP----FIQLEEGYH----------PCANASTYIPNGLELGTASEAPLSLLTGPNMGGKS 965
Fly 966 TLMREVGLLVIMAQIGAHIPAASCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATC 1030
Fly 1031 HSLVLLDELGRGTATYDGTAIAASVVNFLANLKCRTLFSTHYHNLIDFFHNDK-RITLGHMACMV 1094
Fly 1095 ENEDNADPTQETVTFLYKYTAGAC-PKSYGFNAAKLAGMPQGIIKRAYELSKKVEAIALQRK--- 1155
Fly 1156 -----------ITAKIVAATAGNEDTKKEKINALKDLLKQLK 1186 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Msh6 | NP_648755.1 | MttA_Hcf106 | <44..156 | CDD:294511 | |
MutS | 261..1186 | CDD:223327 | 199/885 (22%) | ||
MutS_I | 263..375 | CDD:279898 | |||
MutS_II | 391..508 | CDD:282973 | 20/116 (17%) | ||
MutS_III | 584..>667 | CDD:282977 | 20/88 (23%) | ||
MutS_IV | 767..859 | CDD:282975 | 19/109 (17%) | ||
ABC_MSH6_euk | 924..1140 | CDD:213253 | 78/227 (34%) | ||
Msh4 | NP_114076.1 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 51..110 | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 124..161 | ||||
MutS_II | 177..315 | CDD:282973 | 27/167 (16%) | ||
MutS_III | 337..>422 | CDD:282977 | 19/84 (23%) | ||
MUTSd | 356..678 | CDD:214710 | 76/377 (20%) | ||
MutS_IV | 515..609 | CDD:282975 | 19/113 (17%) | ||
MutS_V | 657..893 | CDD:278891 | 80/247 (32%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0249 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |